Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1714.5 925 100.0
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1454.5 936 84.4
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1360.5 938 78.5
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1339.7 929 77.2
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1325.1 928 76.7
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1319.3 928 75.4
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1312.4 928 75.0
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1216.8 939 68.1
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1208.0 933 69.6
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1196.0 940 67.0
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1158.7 928 70.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1157.9 945 64.8
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1130.9 937 64.9
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1127.9 945 63.3
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1121.3 941 63.4
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1121.3 943 63.2
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1108.2 935 63.5
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1101.7 946 61.7
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1091.3 935 61.7
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1091.3 935 61.2
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1090.9 919 64.1
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1088.6 944 64.5
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1086.2 924 62.8
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1085.9 932 61.3
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1083.6 932 61.2
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1080.9 942 63.9
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1078.5 957 60.7
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1078.2 933 61.2
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1075.8 947 59.6
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.2e-310 1068.9 848 66.5
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 3.7e-310 1068.1 943 60.8
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 8.2e-310 1067.0 929 65.1
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 3.1e-309 1065.1 930 60.8
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 4.0e-309 1064.7 937 61.2
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 4.5e-308 1061.2 938 59.7
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 1.0e-307 1060.1 914 61.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.0e-307 1060.1 930 61.5
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 8.4e-307 1057.0 935 60.7
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 7.9e-305 1050.4 925 60.4
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 2.5e-303 1045.4 924 61.3
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 1.5e-300 1036.2 941 59.5
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 3.4e-300 1035.0 938 61.4
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 4.5e-300 1034.6 936 59.7
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 7.7e-300 1033.9 887 63.2
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 6.5e-299 1030.8 922 60.5
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 2.3e-296 1022.3 961 58.6
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 1.5e-295 1019.6 719 71.8
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 1.7e-294 1016.1 912 59.0
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 8.2e-294 1013.8 936 59.0
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 4.5e-292 1008.1 921 59.4
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 2.2e-291 1005.7 900 59.7
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 2.9e-291 1005.4 937 58.3
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 1.4e-290 1003.0 931 58.1
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 1.9e-290 1002.7 939 57.8
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 3.2e-290 1001.9 931 58.1
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 2.1e-289 999.2 909 59.6
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 2.0e-287 992.6 927 57.3
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 2.4e-285 985.7 884 59.4
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 5.3e-285 984.6 924 57.0
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.2e-284 983.4 894 58.6
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 1.2e-284 983.4 940 59.4
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 1.6e-284 983.0 916 58.8
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 3.5e-284 981.9 936 58.7
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 4.5e-284 981.5 899 57.2
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 1.7e-283 979.5 896 57.7
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 1.5e-282 976.5 921 58.8
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 1.5e-282 976.5 899 57.1
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 9.4e-282 973.8 898 56.5
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 4.7e-281 971.5 899 56.4
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 1.4e-280 969.9 925 57.3
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 6.7e-280 967.6 926 56.7
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 8.8e-280 967.2 947 59.7
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 1.1e-279 966.8 885 57.4
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 1.5e-279 966.5 948 60.0
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 3.1e-277 958.7 927 58.6
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 3.1e-277 958.7 870 59.5
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.0e-276 956.1 894 56.9
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 2.9e-275 952.2 913 56.4
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 2.6e-271 939.1 932 55.6
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 7.5e-271 937.6 939 54.0
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 1.0e-267 927.2 910 57.7
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 2.9e-267 925.6 910 57.8
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 1.6e-265 919.8 898 56.6
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 1.0e-264 917.1 909 56.9
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 6.3e-262 907.9 932 53.8
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 1.1e-258 897.1 911 57.2
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 1.1e-253 880.6 686 68.1
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 2.1e-249 866.3 852 57.2
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 8.0e-249 864.4 908 55.3
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.5e-231 807.0 911 50.5
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.0e-231 806.6 875 52.1
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 3.0e-227 792.7 974 49.3
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 1.7e-222 776.9 718 56.8
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.8e-211 740.3 762 52.2
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.4e-200 704.1 658 57.3
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 1.3e-193 681.0 726 51.2
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 6.1e-188 662.1 795 46.5
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.9e-186 657.1 793 46.0
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.6e-175 620.2 872 40.4
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 5.5e-173 612.5 404 76.2
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.0e-170 604.0 762 43.2
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 5.9e-167 592.4 569 54.5
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 7.2e-165 585.5 885 39.1
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 2.9e-158 563.5 769 42.3
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 1.2e-154 551.6 548 53.3
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.9e-149 534.3 427 72.4
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.3e-142 511.5 638 44.8
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.1e-119 434.5 610 41.0
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 4.7e-108 396.7 367 59.1
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 3.8e-97 360.5 360 57.8
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 4.9e-97 360.1 236 75.4
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 3.2e-96 357.5 349 58.7
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.0e-94 352.4 349 58.5
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 3.0e-86 324.3 376 52.9
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 1.8e-83 315.1 492 37.0
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 1.5e-69 268.9 474 34.8
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-60 236.9 340 35.9
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.9e-50 203.8 300 38.3
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.7e-41 175.6 167 56.9
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 6.8e-38 163.7 349 31.5
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 4.3e-24 117.9 115 53.0
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 9.5e-24 116.7 203 39.4
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 4.7e-23 114.4 127 50.4
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 8.9e-22 110.2 118 50.0
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 1.2e-21 109.8 118 50.0
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.6e-18 99.4 130 48.5
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.3e-12 79.7 61 60.7
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.1e-11 76.6 126 39.7
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 2.3e-09 68.9 133 39.1


User provided reference genes

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