Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G220700 Prunus persica HOM05D004313 ORTHO05D005036 2.7e-51 204.9 95 100.0
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 3.6e-11 71.6 43 72.1
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 4.7e-11 71.2 43 72.1
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 8.0e-11 70.5 80 45.0
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 1.4e-10 69.7 43 67.4
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 1.4e-10 69.7 43 69.8
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.4e-10 69.7 43 69.8
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 1.4e-10 69.7 43 69.8
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 1.8e-10 69.3 43 67.4
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 1.8e-10 69.3 43 67.4
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 2.3e-10 68.9 43 67.4
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 2.3e-10 68.9 87 42.5
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 2.3e-10 68.9 43 67.4
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 2.3e-10 68.9 43 67.4
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 2.3e-10 68.9 51 62.7
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 2.3e-10 68.9 43 69.8
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 4.0e-10 68.2 87 42.5
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 4.0e-10 68.2 43 67.4
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 4.0e-10 68.2 43 67.4
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 4.0e-10 68.2 43 65.1
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 5.2e-10 67.8 86 45.3
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 5.2e-10 67.8 51 62.7
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 5.2e-10 67.8 51 62.7
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 5.2e-10 67.8 43 67.4
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 5.2e-10 67.8 51 60.8
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 5.2e-10 67.8 52 61.5
CSS0037121 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 6.8e-10 67.4 51 62.7
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 6.8e-10 67.4 43 67.4
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 6.8e-10 67.4 43 67.4
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 6.8e-10 67.4 43 65.1
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 6.8e-10 67.4 80 46.2
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 8.8e-10 67.0 43 65.1
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 8.8e-10 67.0 43 65.1
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 8.8e-10 67.0 43 65.1
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 8.8e-10 67.0 43 65.1
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 8.8e-10 67.0 43 65.1
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 8.8e-10 67.0 80 42.5
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 1.2e-09 66.6 43 67.4
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.2e-09 66.6 43 65.1
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 1.2e-09 66.6 43 67.4
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 1.2e-09 66.6 75 45.3
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 1.2e-09 66.6 86 44.2
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 1.2e-09 66.6 86 44.2
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.5e-09 66.2 43 62.8
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 1.5e-09 66.2 87 42.5
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 1.5e-09 66.2 43 62.8
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 2.0e-09 65.9 51 60.8
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 2.0e-09 65.9 51 62.7
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 2.0e-09 65.9 43 62.8
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 2.6e-09 65.5 80 43.8
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 2.6e-09 65.5 43 62.8
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 3.4e-09 65.1 43 65.1
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 3.4e-09 65.1 43 65.1
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 3.4e-09 65.1 43 62.8
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 3.4e-09 65.1 43 65.1
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 3.4e-09 65.1 43 65.1
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 4.4e-09 64.7 43 62.8
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 4.4e-09 64.7 51 60.8
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 4.4e-09 64.7 51 58.8
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 4.4e-09 64.7 51 58.8
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 4.4e-09 64.7 43 60.5
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 4.4e-09 64.7 43 60.5
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 4.4e-09 64.7 43 62.8
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 4.4e-09 64.7 43 62.8
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 4.4e-09 64.7 43 62.8
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 4.4e-09 64.7 51 58.8
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 4.4e-09 64.7 51 56.9
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 4.4e-09 64.7 51 58.8
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 5.7e-09 64.3 43 62.8
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 7.5e-09 63.9 52 57.7
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 9.8e-09 63.5 43 60.5
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 9.8e-09 63.5 43 60.5
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 9.8e-09 63.5 43 60.5
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 1.3e-08 63.2 51 54.9
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 1.3e-08 63.2 43 60.5
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 1.7e-08 62.8 80 42.5
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 1.7e-08 62.8 51 56.9
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 1.7e-08 62.8 51 56.9
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 1.7e-08 62.8 43 62.8
Oeu022185.1 Olea europaea HOM05D004313 ORTHO05D005036 1.7e-08 62.8 39 74.4
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 2.2e-08 62.4 43 60.5
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 2.8e-08 62.0 51 52.9
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 6.3e-08 60.8 65 47.7
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 8.3e-08 60.5 30 86.7
CDE05G2166 Ceratophyllum demersum HOM05D004313 ORTHO05D005036 8.3e-08 60.5 44 54.5
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 2.4e-07 58.9 51 52.9
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 9.2e-07 57.0 43 51.2
HPP92_025604 Vanilla planifolia HOM05D004313 ORTHO05D005036 1.2e-06 56.6 43 53.5
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 2.7e-06 55.5 43 53.5
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 3.5e-06 55.1 26 92.3
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 3.5e-06 55.1 26 92.3
Cpa.g.sc391.3 Carica papaya HOM05D004313 ORTHO05D005036 5.9e-06 54.3 43 53.5


User provided reference genes

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