Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 2.0e-101 372.5 196 100.0
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 4.0e-73 278.5 197 79.7
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 7.5e-64 247.7 196 70.9
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 6.0e-45 184.9 174 59.8
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.5e-43 179.5 197 55.3
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.6e-43 178.3 174 58.6
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 1.1e-41 174.1 198 53.5
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.1e-41 174.1 198 53.5
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 1.4e-41 173.7 197 53.8
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 1.6e-29 133.7 193 49.7
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 4.6e-29 132.1 204 45.6
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 4.6e-29 132.1 203 44.8
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 7.4e-27 124.8 210 46.7
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 1.6e-26 123.6 188 46.3
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 3.7e-26 122.5 205 46.3
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 8.2e-26 121.3 207 44.0
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 2.4e-25 119.8 210 44.8
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 5.3e-25 118.6 202 47.5
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 5.8e-24 115.2 192 45.8
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.0e-23 114.4 117 53.0
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 2.9e-23 112.8 198 44.4
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.9e-23 112.1 195 40.5
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 6.5e-23 111.7 201 40.3
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.1e-22 110.9 194 40.2
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.4e-22 110.5 161 46.0
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 2.5e-22 109.8 195 43.6
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 3.2e-22 109.4 195 40.0
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 1.2e-21 107.5 177 40.1
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 1.6e-21 107.1 172 44.2
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 2.7e-21 106.3 195 39.0
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 2.7e-21 106.3 196 41.8
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 7.9e-21 104.8 209 38.3
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.0e-20 104.4 163 41.7
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 2.3e-20 103.2 149 46.3
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 2.3e-20 103.2 153 41.2
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 6.7e-20 101.7 157 43.9
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 6.7e-20 101.7 162 40.1
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 6.7e-20 101.7 162 40.1
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 2.5e-19 99.8 168 42.9
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 2.5e-19 99.8 198 40.4
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 2.2e-18 96.7 195 40.0
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 4.8e-18 95.5 156 37.8
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 1.4e-17 94.0 154 40.3
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 3.1e-17 92.8 201 41.8
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 6.9e-17 91.7 165 37.0
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 2.0e-16 90.1 220 36.8
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 5.9e-16 88.6 162 40.1
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.3e-15 87.4 181 38.7
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 1.7e-15 87.0 146 40.4
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 1.7e-15 87.0 199 36.7
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 2.9e-15 86.3 165 40.0
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 6.5e-15 85.1 171 37.4
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 6.5e-15 85.1 164 35.4
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 8.5e-15 84.7 172 39.5
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 1.1e-14 84.3 208 34.6
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.1e-14 84.3 200 35.5
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 1.9e-14 83.6 200 37.0
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 1.9e-14 83.6 198 38.4
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.9e-14 83.6 222 33.3
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.9e-14 83.6 212 34.0
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 5.5e-14 82.0 190 33.2
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 5.5e-14 82.0 194 38.1
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 7.2e-14 81.6 197 35.5
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 7.2e-14 81.6 193 34.7
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 9.4e-14 81.3 166 36.1
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 9.4e-14 81.3 184 33.7
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 9.4e-14 81.3 155 40.6
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 2.1e-13 80.1 177 37.3
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 3.6e-13 79.3 203 35.0
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 1.0e-12 77.8 196 36.2
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 3.9e-12 75.9 206 35.4
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 6.7e-12 75.1 191 32.5
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 1.1e-11 74.3 160 41.2
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.1e-11 74.3 194 30.9
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 1.5e-11 73.9 157 33.8
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.5e-11 73.9 200 35.5
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 2.5e-11 73.2 226 34.5
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.3e-11 72.8 155 36.8
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 9.7e-11 71.2 192 33.9
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 9.7e-11 71.2 124 37.1
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 1.3e-10 70.9 187 33.2
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.7e-10 70.5 209 31.1
Psat4g081120 Pisum sativum HOM05D005432 ORTHO05D004599 2.8e-10 69.7 91 46.2
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 3.7e-10 69.3 151 29.1
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 3.7e-10 69.3 151 29.1
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 3.7e-10 69.3 72 51.4
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 4.8e-10 68.9 201 34.3
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 6.3e-10 68.6 193 34.2
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 6.3e-10 68.6 160 36.9
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 1.4e-09 67.4 151 29.1
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 1.4e-09 67.4 151 29.1
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.4e-09 67.4 216 33.8
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 1.4e-09 67.4 195 31.3
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 2.4e-09 66.6 138 35.5
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 4.1e-09 65.9 102 44.1
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 5.3e-09 65.5 60 51.7
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 5.3e-09 65.5 170 32.4
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 9.1e-09 64.7 152 32.9
Psat4g081760 Pisum sativum HOM05D005432 ORTHO05D004599 1.2e-08 64.3 204 34.3
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 1.5e-08 63.9 62 46.8
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 2.6e-08 63.2 108 34.3
Lalb_Chr05g0225821 Lupinus albus HOM05D005432 ORTHO05D004599 2.6e-08 63.2 195 31.8
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 3.4e-08 62.8 217 32.7
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 5.9e-08 62.0 211 33.6
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 5.9e-08 62.0 77 42.9
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 7.7e-08 61.6 229 28.8
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 7.7e-08 61.6 176 32.4
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 7.7e-08 61.6 109 38.5
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 1.0e-07 61.2 234 30.3
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 1.3e-07 60.8 183 33.3
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 1.3e-07 60.8 187 31.6
Os12g0635400 Oryza sativa ssp. japonica HOM05D028778 ORTHO05D030403 1.7e-07 60.5 72 44.4
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 1.7e-07 60.5 105 33.3
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 2.2e-07 60.1 193 34.2
Eucgr.H02319 Eucalyptus grandis HOM05D005432 ORTHO05D004599 6.5e-07 58.5 139 32.4
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 6.5e-07 58.5 178 30.3
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 8.5e-07 58.2 160 33.1
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 8.5e-07 58.2 170 30.6
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 1.1e-06 57.8 48 52.1
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 1.1e-06 57.8 48 52.1
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 1.1e-06 57.8 48 52.1
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 1.1e-06 57.8 188 30.9
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 1.1e-06 57.8 71 46.5
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 1.1e-06 57.8 94 40.4
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 1.1e-06 57.8 52 50.0
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 1.9e-06 57.0 158 31.0
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 1.9e-06 57.0 65 47.7
Lsat_1_v5_gn_4_160281 Lactuca sativa HOM05D005432 ORTHO05D004599 1.9e-06 57.0 83 41.0
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 1.9e-06 57.0 175 29.1
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 2.5e-06 56.6 162 32.1
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 2.5e-06 56.6 160 34.4
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 2.5e-06 56.6 66 45.5
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 3.2e-06 56.2 48 50.0
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 3.2e-06 56.2 48 50.0
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 3.2e-06 56.2 63 49.2
Lalb_Chr16g0378951 Lupinus albus HOM05D005432 ORTHO05D004599 3.2e-06 56.2 88 44.3
CARHR246100 Cardamine hirsuta HOM05D009364 ORTHO05D004599 4.2e-06 55.8 51 49.0
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 4.2e-06 55.8 42 54.8
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 4.2e-06 55.8 212 32.1
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 5.5e-06 55.5 55 47.3
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 5.5e-06 55.5 48 52.1
CDE04G1981 Ceratophyllum demersum HOM05D005432 ORTHO05D004599 5.5e-06 55.5 158 28.5
arahy.Tifrunner.gnm1.ann1.6CR1D2 Arachis hypogaea HOM05D005432 ORTHO05D004599 7.2e-06 55.1 59 45.8
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 7.2e-06 55.1 56 48.2
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 9.4e-06 54.7 162 35.8


User provided reference genes

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