Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 1.1e-96 356.7 195 100.0
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 5.5e-75 284.6 197 79.7
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 1.5e-59 233.4 195 67.2
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 3.6e-42 175.6 167 60.5
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.2e-41 171.8 167 59.3
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 6.8e-41 171.4 167 59.3
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 1.5e-40 170.2 168 57.7
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.5e-40 170.2 168 57.7
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 1.9e-38 163.3 198 53.0
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 3.8e-31 139.0 201 49.8
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 6.4e-31 138.3 205 49.8
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 9.3e-30 134.4 202 44.1
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 1.1e-27 127.5 155 51.0
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 8.1e-26 121.3 214 44.4
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 4.0e-25 119.0 195 45.6
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 1.2e-24 117.5 195 46.2
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 2.6e-24 116.3 159 50.3
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 2.6e-24 116.3 176 43.2
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.1e-22 110.9 110 55.5
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 1.4e-22 110.5 181 44.8
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 1.4e-22 110.5 199 40.2
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 2.4e-22 109.8 195 42.1
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 2.4e-22 109.8 160 45.6
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 7.1e-22 108.2 164 45.1
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 9.3e-22 107.8 162 43.2
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 1.6e-21 107.1 176 42.0
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.7e-21 106.3 163 42.9
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 4.6e-21 105.5 179 43.0
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.8e-20 103.6 185 40.0
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 2.3e-20 103.2 173 43.9
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 3.9e-20 102.4 150 41.3
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 3.9e-20 102.4 173 41.0
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 6.7e-20 101.7 147 46.3
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.1e-19 100.9 162 43.2
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.1e-19 100.9 160 46.2
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.9e-19 100.1 162 42.6
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.9e-19 100.1 162 42.6
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 2.5e-19 99.8 155 44.5
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 4.3e-19 99.0 165 41.8
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 1.6e-18 97.1 153 39.2
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.6e-18 97.1 193 43.0
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 8.1e-18 94.7 149 39.6
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 2.4e-17 93.2 172 38.4
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 4.0e-17 92.4 187 39.0
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.5e-16 90.5 153 41.2
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 1.7e-15 87.0 140 41.4
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 2.9e-15 86.3 178 39.3
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 4.9e-15 85.5 159 37.7
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 6.4e-15 85.1 193 34.7
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 6.4e-15 85.1 187 39.0
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.4e-14 84.0 162 37.0
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 2.4e-14 83.2 165 38.2
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 1.2e-13 80.9 190 32.1
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 1.2e-13 80.9 158 40.5
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 1.6e-13 80.5 172 38.4
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.5e-13 79.3 176 36.4
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 7.9e-13 78.2 162 35.8
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 7.9e-13 78.2 148 37.8
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 7.9e-13 78.2 155 40.0
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.0e-12 77.8 197 34.0
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.3e-12 77.4 148 37.8
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 2.3e-12 76.6 177 38.4
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 3.0e-12 76.3 192 34.4
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 3.0e-12 76.3 199 34.2
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 3.9e-12 75.9 198 32.8
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 6.7e-12 75.1 197 34.5
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 8.7e-12 74.7 201 33.8
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 1.1e-11 74.3 196 32.7
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 1.9e-11 73.6 167 35.3
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 3.3e-11 72.8 181 32.0
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 4.3e-11 72.4 186 33.9
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 5.6e-11 72.0 177 32.8
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 5.6e-11 72.0 192 33.3
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 9.6e-11 71.2 156 34.0
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 9.6e-11 71.2 112 39.3
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 1.3e-10 70.9 196 36.7
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 2.1e-10 70.1 203 32.0
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 2.8e-10 69.7 155 34.8
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 3.7e-10 69.3 169 29.6
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 3.7e-10 69.3 169 29.6
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 3.7e-10 69.3 69 53.6
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 3.7e-10 69.3 162 37.7
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 4.8e-10 68.9 158 38.0
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 8.2e-10 68.2 184 33.2
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 1.1e-09 67.8 147 29.9
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 1.1e-09 67.8 147 29.9
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.4e-09 67.4 60 53.3
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 2.4e-09 66.6 186 34.4
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 5.3e-09 65.5 62 48.4
Psat4g081120 Pisum sativum HOM05D005432 ORTHO05D004599 6.9e-09 65.1 86 47.7
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 6.9e-09 65.1 171 34.5
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 9.0e-09 64.7 95 44.2
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 9.0e-09 64.7 162 35.2
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 1.2e-08 64.3 128 32.8
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.5e-08 63.9 60 51.7
CDE04G1981 Ceratophyllum demersum HOM05D005432 ORTHO05D004599 2.6e-08 63.2 156 31.4
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 4.5e-08 62.4 158 33.5
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 4.5e-08 62.4 101 35.6
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 7.6e-08 61.6 185 35.1
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 1.3e-07 60.8 75 42.7
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 1.3e-07 60.8 75 42.7
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 1.3e-07 60.8 75 42.7
Eucgr.H02319 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.3e-07 60.8 134 34.3
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 1.3e-07 60.8 60 51.7
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 1.3e-07 60.8 65 47.7
Aa31LG7G13930 Aethionema arabicum HOM05D009364 ORTHO05D004599 1.7e-07 60.5 48 56.2
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 2.9e-07 59.7 160 33.1
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 2.9e-07 59.7 70 48.6
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 4.9e-07 58.9 78 42.3
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 4.9e-07 58.9 164 34.1
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 4.9e-07 58.9 160 31.2
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 6.5e-07 58.5 49 53.1
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 6.5e-07 58.5 43 55.8
Lalb_Chr05g0225821 Lupinus albus HOM05D005432 ORTHO05D004599 6.5e-07 58.5 195 31.3
Psat4g081760 Pisum sativum HOM05D005432 ORTHO05D004599 6.5e-07 58.5 206 31.6
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 6.5e-07 58.5 203 31.0
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 1.1e-06 57.8 49 53.1
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.4e-06 57.4 73 46.6
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.4e-06 57.4 166 29.5
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 1.9e-06 57.0 49 51.0
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 1.9e-06 57.0 49 51.0
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 1.9e-06 57.0 46 52.2
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 1.9e-06 57.0 175 34.3
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 2.5e-06 56.6 74 40.5
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 3.2e-06 56.2 63 46.0
AT4G37710 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 4.2e-06 55.8 50 54.0
Psat2g172120 Pisum sativum HOM05D005432 ORTHO05D004599 4.2e-06 55.8 160 32.5
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 4.2e-06 55.8 70 45.7
CARHR246100 Cardamine hirsuta HOM05D009364 ORTHO05D004599 5.5e-06 55.5 66 45.5
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 7.1e-06 55.1 77 37.7
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 9.3e-06 54.7 46 52.2
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 9.3e-06 54.7 157 34.4


User provided reference genes

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