Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 2.3e-18 94.7 55 100.0
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 7.4e-17 89.7 53 83.0
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 7.4e-17 89.7 53 83.0
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 1.6e-16 88.6 54 79.6
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 4.8e-16 87.0 55 78.2
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 6.2e-16 86.7 55 78.2
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 1.8e-15 85.1 55 76.4
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 4.0e-15 84.0 55 72.7
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 5.3e-15 83.6 56 78.6
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 6.9e-15 83.2 55 74.5
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 6.9e-15 83.2 55 72.7
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 9.0e-15 82.8 52 78.8
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 1.2e-14 82.4 55 72.7
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 1.5e-14 82.0 55 70.9
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 1.5e-14 82.0 54 70.4
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 1.5e-14 82.0 55 74.5
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 3.4e-14 80.9 54 72.2
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 5.8e-14 80.1 55 70.9
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 7.6e-14 79.7 55 69.1
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 1.0e-13 79.3 55 67.3
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 1.0e-13 79.3 55 67.3
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 1.3e-13 79.0 38 94.7
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 1.3e-13 79.0 58 79.3
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 1.3e-13 79.0 54 70.4
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 2.2e-13 78.2 53 71.7
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 2.9e-13 77.8 57 82.5
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 3.8e-13 77.4 50 76.0
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 3.8e-13 77.4 54 70.4
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 3.8e-13 77.4 55 67.3
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 1.1e-12 75.9 54 68.5
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 1.1e-12 75.9 54 68.5
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 1.1e-12 75.9 54 68.5
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 1.1e-12 75.9 54 68.5
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 1.1e-12 75.9 54 68.5
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 1.1e-12 75.9 54 68.5
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 1.1e-12 75.9 54 68.5
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 2.5e-12 74.7 54 64.8
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 2.5e-12 74.7 52 71.2
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 2.5e-12 74.7 52 71.2
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 3.2e-12 74.3 38 89.5
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 3.2e-12 74.3 63 63.5
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 5.5e-12 73.6 37 86.5
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 5.5e-12 73.6 37 86.5
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 1.6e-11 72.0 38 86.8
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 1.6e-11 72.0 38 86.8
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 2.1e-11 71.6 38 84.2
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 2.1e-11 71.6 36 86.1
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 2.7e-11 71.2 34 94.1
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 2.7e-11 71.2 34 94.1
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 2.7e-11 71.2 61 65.6
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 1.0e-10 69.3 38 86.8
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 5.7e-09 63.5 49 65.3
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 1.3e-08 62.4 53 60.4
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 1.6e-08 62.0 38 76.3
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 8.2e-08 59.7 101 38.6
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 1.4e-07 58.9 35 80.0
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 3.4e-06 54.3 37 67.6
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 3.4e-06 54.3 37 67.6
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 7.7e-06 53.1 36 66.7
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 1.0e-05 52.8 50 54.0


User provided reference genes

Program Settings