Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 4.2e-71 271.2 129 100.0
FvH4_1g18110 Fragaria vesca HOM05D020383 ORTHO05D022607 2.0e-17 92.8 128 47.7
FAN26G0269 Fragaria x ananassa HOM05D020383 ORTHO05D022607 1.0e-16 90.5 126 46.8
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 7.3e-15 84.3 86 50.0
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.1e-14 82.8 113 44.2
RcHm_v2.0_Chr2g0108601 Rosa chinensis HOM05D020383 ORTHO05D022607 2.1e-14 82.8 108 48.1
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.1e-13 80.5 90 47.8
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.4e-13 80.1 118 40.7
FAN19G0205 Fragaria x ananassa HOM05D020383 ORTHO05D022607 1.8e-13 79.7 110 46.4
FvH4_1g18141 Fragaria vesca HOM05D020383 ORTHO05D022607 5.2e-13 78.2 104 45.2
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 9.8e-12 73.9 100 45.0
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 2.2e-11 72.8 84 44.0
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 3.7e-11 72.0 105 42.9
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 2.4e-10 69.3 76 47.4
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 5.4e-10 68.2 80 46.2
Cfa004384 Carpinus fangiana HOM05D007433 ORTHO05D009199 1.2e-09 67.0 108 39.8
Haze_15029 Corylus avellana HOM05D007433 ORTHO05D020523 1.2e-09 67.0 109 41.3
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 2.0e-09 66.2 80 45.0
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 2.0e-09 66.2 108 39.8
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 3.5e-09 65.5 71 46.5
QL06p038982 Quercus lobata HOM05D007433 ORTHO05D009199 3.5e-09 65.5 47 59.6
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 4.6e-09 65.1 61 50.8
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 7.8e-09 64.3 54 57.4
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 1.0e-08 63.9 90 42.2
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.7e-08 63.2 62 51.6
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.3e-08 62.8 60 53.3
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.3e-08 62.8 60 53.3
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 2.3e-08 62.8 47 63.8
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 3.9e-08 62.0 64 51.6
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 5.0e-08 61.6 62 51.6
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 5.0e-08 61.6 72 45.8
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 5.0e-08 61.6 79 43.0
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 6.6e-08 61.2 62 50.0
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 6.6e-08 61.2 60 51.7
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 6.6e-08 61.2 77 45.5
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 6.6e-08 61.2 47 61.7
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 6.6e-08 61.2 64 50.0
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 8.6e-08 60.8 80 43.8
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 8.6e-08 60.8 62 50.0
Eucgr.H02327 Eucalyptus grandis HOM05D007433 ORTHO05D009199 8.6e-08 60.8 95 35.8
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 8.6e-08 60.8 53 56.6
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.1e-07 60.5 67 46.3
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 1.5e-07 60.1 55 54.5
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 1.9e-07 59.7 55 52.7
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 1.9e-07 59.7 46 65.2
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.5e-07 59.3 69 44.9
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 2.5e-07 59.3 110 36.4
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 2.5e-07 59.3 54 55.6
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 4.3e-07 58.5 107 32.7
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 4.3e-07 58.5 75 44.0
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 4.3e-07 58.5 69 44.9
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 4.3e-07 58.5 48 62.5
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 5.6e-07 58.2 83 43.4
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 5.6e-07 58.2 78 41.0
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 7.3e-07 57.8 48 54.2
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 9.5e-07 57.4 73 45.2
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 9.5e-07 57.4 39 66.7
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 9.5e-07 57.4 74 40.5
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 9.5e-07 57.4 80 45.0
TPR.G3698 Trifolium pratense HOM05D021398 ORTHO05D020523 9.5e-07 57.4 92 37.0
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 1.2e-06 57.0 47 53.2
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.2e-06 57.0 91 42.9
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 1.6e-06 56.6 63 47.6
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.6e-06 56.6 69 43.5
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 1.6e-06 56.6 56 53.6
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 1.6e-06 56.6 80 40.0
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 1.6e-06 56.6 89 37.1
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 2.1e-06 56.2 87 44.8
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 2.1e-06 56.2 50 52.0
Medtr4g097420 Medicago truncatula HOM05D021398 ORTHO05D020523 2.1e-06 56.2 57 50.9
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 2.1e-06 56.2 63 47.6
Glyma.05G108000 Glycine max HOM05D021398 ORTHO05D020523 2.8e-06 55.8 81 42.0
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 3.6e-06 55.5 63 49.2
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 3.6e-06 55.5 63 49.2
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.6e-06 55.5 55 47.3
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.6e-06 55.5 55 47.3
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.6e-06 55.5 55 47.3
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 4.7e-06 55.1 91 41.8
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 4.7e-06 55.1 91 41.8
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 4.7e-06 55.1 58 50.0
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 4.7e-06 55.1 59 45.8
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 6.2e-06 54.7 91 41.8
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 6.2e-06 54.7 67 41.8
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 6.2e-06 54.7 39 61.5
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 6.2e-06 54.7 63 49.2
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 8.1e-06 54.3 69 44.9
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 8.1e-06 54.3 55 47.3


User provided reference genes

Program Settings