Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 5.7e-147 524.2 266 100.0
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 3.6e-117 425.2 266 83.8
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.7e-114 416.4 269 81.4
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.1e-113 412.1 266 81.6
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 7.0e-113 411.0 266 83.1
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 7.7e-112 407.5 266 80.8
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.7e-112 407.5 266 80.8
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.2e-110 401.0 266 80.1
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 1.0e-108 397.1 266 80.5
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.4e-107 392.1 257 82.5
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.4e-100 370.2 250 75.2
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 1.5e-99 366.7 267 71.9
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 4.4e-99 365.2 269 70.6
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 2.2e-98 362.8 260 70.0
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 2.9e-98 362.5 269 71.7
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 6.4e-98 361.3 248 72.6
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.1e-97 360.5 267 69.3
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 3.2e-97 359.0 243 74.1
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.0e-97 357.8 266 74.4
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 3.5e-96 355.5 267 70.0
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 3.5e-96 355.5 264 68.2
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 5.9e-96 354.8 261 71.6
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 7.8e-96 354.4 271 69.7
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 1.0e-95 354.0 249 72.3
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 1.0e-95 354.0 245 71.8
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.3e-95 353.6 267 71.2
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 2.3e-95 352.8 261 70.9
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 3.0e-95 352.4 271 70.5
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 3.0e-95 352.4 266 69.2
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 1.1e-94 350.5 265 69.4
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.1e-94 350.5 261 70.9
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.1e-94 350.5 239 74.1
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 2.5e-94 349.4 266 67.3
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 3.3e-94 349.0 256 68.8
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 5.6e-94 348.2 268 67.2
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 5.6e-94 348.2 260 70.4
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 7.3e-94 347.8 264 67.8
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 9.5e-94 347.4 246 70.3
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 9.5e-94 347.4 269 68.8
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.2e-93 347.1 253 69.2
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.6e-93 346.7 239 71.1
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.6e-93 346.7 245 71.0
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.1e-93 346.3 239 70.7
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.8e-93 345.9 222 78.8
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 2.8e-93 345.9 248 70.6
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 6.2e-93 344.7 198 83.8
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 6.2e-93 344.7 247 70.9
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 8.0e-93 344.4 248 72.2
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.1e-92 344.0 239 70.3
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 1.4e-92 343.6 240 71.7
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 1.8e-92 343.2 261 67.0
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 2.3e-92 342.8 253 69.6
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 2.3e-92 342.8 265 68.3
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 5.2e-92 341.7 252 69.4
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 6.8e-92 341.3 251 70.1
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 1.2e-91 340.5 271 67.9
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 5.8e-91 338.2 254 70.1
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 5.8e-91 338.2 276 67.4
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 7.5e-91 337.8 230 70.9
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 2.2e-90 336.3 263 67.3
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.9e-90 335.9 195 79.0
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 2.9e-90 335.9 249 69.9
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 3.7e-90 335.5 254 70.1
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 1.4e-89 333.6 253 66.4
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.9e-89 333.2 253 67.6
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 2.4e-89 332.8 245 69.0
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 4.1e-89 332.0 203 76.8
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 1.2e-88 330.5 250 67.6
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 1.6e-88 330.1 269 66.2
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 1.6e-88 330.1 261 65.5
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 3.5e-88 328.9 236 68.6
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.0e-87 327.4 267 64.8
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.3e-87 326.2 198 78.3
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 3.9e-87 325.5 273 64.8
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 5.0e-87 325.1 269 62.8
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 8.6e-87 324.3 266 64.7
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.1e-86 323.9 250 68.0
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.9e-86 323.2 201 81.1
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 3.3e-86 322.4 252 64.3
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 4.3e-86 322.0 272 62.1
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 4.3e-86 322.0 252 64.3
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 4.3e-86 322.0 261 64.4
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.3e-86 322.0 261 65.1
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.3e-86 322.0 259 61.0
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.2e-85 320.5 263 63.1
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.6e-85 320.1 260 64.2
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 2.8e-85 319.3 268 62.7
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 3.6e-85 318.9 213 70.4
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 2.3e-84 316.2 266 63.2
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 5.2e-84 315.1 250 63.6
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.2e-83 313.9 192 77.1
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 1.5e-83 313.5 263 63.9
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 2.6e-83 312.8 253 61.7
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 2.6e-83 312.8 253 61.7
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 4.4e-83 312.0 241 66.0
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 7.5e-83 311.2 258 60.9
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 7.5e-83 311.2 258 61.2
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.3e-82 310.5 192 76.0
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.7e-82 310.1 201 75.6
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.7e-82 310.1 200 76.0
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 2.9e-82 309.3 273 61.5
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 6.4e-82 308.1 262 61.5
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.2e-81 305.8 160 89.4
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 4.1e-81 305.4 232 68.1
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 9.2e-81 304.3 197 72.6
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 1.3e-79 300.4 259 61.8
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.5e-78 296.2 259 61.8
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 1.6e-77 293.5 157 86.6
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 3.6e-77 292.4 262 59.2
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 6.2e-77 291.6 167 78.4
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 5.2e-76 288.5 159 83.6
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 2.0e-75 286.6 262 61.5
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 3.2e-73 279.3 166 82.5
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.1e-73 278.9 202 67.8
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 3.0e-71 272.7 249 54.6
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 5.6e-70 268.5 263 58.2
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 2.1e-69 266.5 230 57.8
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 4.2e-65 252.3 264 56.1
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.6e-61 240.4 253 55.7
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 2.0e-59 233.4 149 75.2
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.9e-57 226.9 239 47.7
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 4.8e-53 212.2 208 55.8
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 5.3e-52 208.8 131 70.2
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 2.6e-51 206.5 236 45.3
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.2e-50 203.4 156 69.9
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 2.5e-46 189.9 102 86.3
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.3e-46 189.5 103 84.5
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.9e-39 166.0 108 69.4
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-37 160.6 127 68.5
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.4e-36 156.8 197 47.2
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 2.9e-34 149.8 100 70.0
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 8.5e-34 148.3 91 74.7
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.9e-33 147.1 101 73.3
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.1e-22 111.3 160 37.5
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 4.4e-22 109.4 151 45.7
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 5.7e-22 109.0 206 34.0
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.1e-20 104.8 69 76.8
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 1.4e-20 104.4 209 31.1
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 4.1e-20 102.8 256 32.0
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 4.2e-17 92.8 176 31.8
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 9.4e-17 91.7 53 81.1
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 3.9e-15 86.3 132 36.4
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 6.7e-15 85.5 182 39.6
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 4.4e-14 82.8 147 32.0
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.4e-12 77.0 239 28.0
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 7.0e-12 75.5 80 50.0
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 2.0e-11 73.9 244 25.4
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 3.5e-11 73.2 133 31.6
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 6.5e-10 68.9 136 33.1
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.2e-09 66.6 103 47.6
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 2.1e-08 63.9 37 78.4
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 3.6e-08 63.2 125 33.6
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 2.3e-07 60.5 110 31.8
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.0e-06 57.4 96 40.6


User provided reference genes

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