Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 3.1e-95 352.4 276 100.0
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 3.5e-83 312.4 281 91.5
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.9e-81 306.6 273 91.2
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 3.0e-74 282.7 266 88.7
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.9e-74 282.3 266 88.3
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 2.5e-73 279.6 271 86.7
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.5e-73 279.6 271 86.7
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.3e-73 278.9 274 85.4
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 7.3e-73 278.1 271 86.0
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 6.9e-71 271.6 253 89.7
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 2.0e-70 270.0 275 84.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 3.2e-68 262.7 266 85.0
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.1e-68 261.5 266 85.0
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.7e-67 259.6 270 80.7
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.6e-67 258.8 250 89.2
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 6.0e-67 258.5 266 83.8
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 1.0e-66 257.7 266 84.2
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.0e-66 257.7 266 84.6
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.0e-66 257.7 266 84.6
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.0e-66 257.7 250 88.4
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.3e-66 257.3 252 87.3
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.3e-66 256.5 265 83.8
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.0e-66 256.1 267 83.5
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 3.9e-66 255.8 248 87.5
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 5.1e-66 255.4 266 83.8
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 6.7e-66 255.0 252 86.9
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.1e-65 254.2 266 75.2
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.5e-65 253.8 269 82.9
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 2.5e-65 253.1 266 82.0
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 7.4e-65 251.5 256 84.8
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 7.4e-65 251.5 256 84.8
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 7.4e-65 251.5 266 82.3
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 9.6e-65 251.1 268 81.3
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.3e-64 250.8 269 81.4
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.3e-64 250.8 269 81.4
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.3e-64 250.8 266 82.0
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.8e-64 249.6 267 83.1
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.8e-64 249.6 265 81.5
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 3.7e-64 249.2 266 81.2
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 4.8e-64 248.8 266 82.3
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 4.8e-64 248.8 269 82.5
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 4.8e-64 248.8 256 84.0
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 6.2e-64 248.4 266 80.8
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.2e-64 248.4 266 80.8
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 8.1e-64 248.1 265 81.1
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.1e-63 247.7 266 82.7
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.1e-63 247.7 266 82.7
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.4e-63 247.3 266 82.0
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 2.4e-63 246.5 256 83.6
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 2.0e-62 243.4 265 81.9
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 2.6e-62 243.0 252 82.9
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 2.6e-62 243.0 256 83.2
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 3.4e-62 242.7 270 78.5
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 3.4e-62 242.7 267 80.1
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 4.5e-62 242.3 270 75.9
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 7.6e-62 241.5 275 80.4
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.7e-61 240.4 258 82.6
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 8.4e-61 238.0 266 78.9
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 8.4e-61 238.0 266 79.3
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.1e-60 237.7 267 79.4
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.1e-60 237.7 263 81.4
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 1.4e-60 237.3 273 75.5
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 1.4e-60 237.3 266 80.8
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 3.2e-60 236.1 261 80.8
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 2.7e-59 233.0 273 77.7
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 4.6e-59 232.3 255 82.0
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 6.0e-59 231.9 243 86.0
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 7.9e-59 231.5 266 78.2
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 7.9e-59 231.5 250 83.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.0e-58 231.1 267 78.3
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.3e-58 230.7 251 84.5
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.0e-58 229.6 267 77.2
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.0e-58 229.6 254 82.3
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.9e-58 229.2 277 75.1
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 5.1e-58 228.8 255 81.2
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 6.7e-58 228.4 251 79.3
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 6.7e-58 228.4 268 79.1
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 6.7e-58 228.4 254 80.7
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 8.7e-58 228.0 268 77.2
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 1.5e-57 227.3 251 80.5
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 2.5e-57 226.5 254 80.7
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 4.3e-57 225.7 252 81.3
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.6e-57 225.3 268 76.5
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 5.6e-57 225.3 250 81.2
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 7.4e-57 224.9 266 77.8
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 7.4e-57 224.9 276 74.6
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 7.4e-57 224.9 276 74.6
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.3e-56 224.2 268 76.1
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.3e-56 224.2 252 80.6
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.6e-56 223.8 256 78.1
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.6e-56 223.8 254 80.3
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.1e-56 223.4 270 77.8
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 2.1e-56 223.4 255 80.4
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 3.7e-56 222.6 254 79.9
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 4.8e-56 222.2 254 79.9
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 4.8e-56 222.2 254 79.9
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 4.8e-56 222.2 250 80.8
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.8e-55 220.3 267 76.4
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 3.1e-55 219.5 269 76.6
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 3.1e-55 219.5 270 75.2
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.1e-55 219.5 271 52.4
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 5.3e-55 218.8 267 76.0
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 9.0e-55 218.0 255 79.2
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 9.0e-55 218.0 256 79.7
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.5e-54 217.2 230 88.3
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 2.0e-54 216.9 256 79.7
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 2.6e-54 216.5 250 78.4
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 2.6e-54 216.5 256 79.3
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 2.6e-54 216.5 256 79.3
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 2.6e-54 216.5 256 79.3
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 2.6e-54 216.5 256 79.3
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.4e-54 216.1 254 78.7
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 3.4e-54 216.1 266 75.9
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 5.8e-54 215.3 254 78.3
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.7e-53 213.8 240 83.3
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 6.5e-53 211.8 267 74.5
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.1e-52 211.1 244 81.1
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 2.5e-52 209.9 259 77.6
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.2e-52 209.1 233 85.8
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.1e-52 208.4 276 44.9
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 2.7e-51 206.5 279 73.1
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 6.0e-51 205.3 228 86.4
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 6.0e-51 205.3 276 73.6
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 1.8e-50 203.8 266 74.8
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 2.3e-50 203.4 272 73.9
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 6.7e-50 201.8 270 74.4
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.8e-48 196.4 220 87.3
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 8.2e-48 194.9 256 75.8
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.8e-47 193.7 276 69.2
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.4e-47 193.4 250 73.2
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 3.1e-47 193.0 269 69.5
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 5.3e-47 192.2 234 82.1
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 2.0e-46 190.3 252 75.4
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 4.5e-46 189.1 229 83.0
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 7.7e-46 188.3 251 69.3
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.9e-44 183.7 257 75.5
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.5e-44 183.3 262 71.0
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 3.2e-44 183.0 261 70.9
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 5.1e-42 175.6 254 59.8
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 7.4e-41 171.8 214 82.7
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 9.1e-39 164.9 248 74.2
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.2e-37 160.2 251 68.1
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.4e-34 151.0 94 77.7
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 1.8e-34 150.6 212 79.7
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.8e-34 150.6 85 84.7
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 5.3e-31 139.0 218 76.6
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.5e-30 136.3 86 75.6
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.7e-29 134.0 266 55.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 9.4e-28 128.3 94 64.9
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.2e-27 127.9 269 63.2
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.1e-27 127.1 274 62.4
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 3.5e-22 109.8 256 57.0
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 5.9e-22 109.0 91 64.8
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.1e-20 104.8 85 62.4
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.1e-20 104.8 70 67.1
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 5.0e-13 79.3 55 74.5
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 1.4e-07 61.2 254 55.9
arahy.Tifrunner.gnm1.ann1.VYJ8LR Arachis hypogaea HOM05D000094 ORTHO05D001056 3.5e-06 56.6 101 31.7
arahy.Tifrunner.gnm1.ann1.92LHRM Arachis hypogaea HOM05D000094 ORTHO05D001056 7.7e-06 55.5 99 32.3


User provided reference genes

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