Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G215100 Prunus persica HOM05D000007 ORTHO05D000017 7.5e-71 270.4 135 100.0
RcHm_v2.0_Chr2g0109761 Rosa chinensis HOM05D000007 ORTHO05D000017 5.4e-21 104.8 112 50.9
Prupe.6G214700 Prunus persica HOM05D000007 ORTHO05D000017 6.0e-20 101.3 117 52.1
FvH4_1g18430 Fragaria vesca HOM05D000007 ORTHO05D000017 2.3e-19 99.4 113 51.3
FvH4_1g18391 Fragaria vesca HOM05D000007 ORTHO05D000017 8.7e-19 97.4 113 50.4
Prupe.6G214900 Prunus persica HOM05D000007 ORTHO05D000017 1.9e-18 96.3 104 51.9
RcHm_v2.0_Chr2g0107881 Rosa chinensis HOM05D000007 ORTHO05D000017 1.6e-17 93.2 114 50.0
FvH4_1g18480 Fragaria vesca HOM05D000007 ORTHO05D000017 2.1e-17 92.8 110 45.5
Prupe.7G008100 Prunus persica HOM05D000007 ORTHO05D000017 3.6e-17 92.0 115 49.6
RcHm_v2.0_Chr2g0109781 Rosa chinensis HOM05D000007 ORTHO05D000017 3.6e-17 92.0 114 45.6
RcHm_v2.0_Chr2g0107811 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-16 89.7 114 46.5
RcHm_v2.0_Chr2g0107821 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-15 86.7 115 47.0
RcHm_v2.0_Chr3g0468171 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-15 86.7 108 46.3
FAN14G5209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.6e-15 85.9 110 45.5
RcHm_v2.0_Chr2g0107801 Rosa chinensis HOM05D000007 ORTHO05D000017 3.4e-15 85.5 115 45.2
RcHm_v2.0_Chr2g0107891 Rosa chinensis HOM05D000007 ORTHO05D000017 5.8e-15 84.7 118 45.8
FvH4_6g14993 Fragaria vesca HOM05D000007 ORTHO05D000017 7.6e-15 84.3 110 44.5
RcHm_v2.0_Chr3g0475411 Rosa chinensis HOM05D000007 ORTHO05D000017 7.6e-15 84.3 109 46.8
FvH4_1g17570 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-14 83.6 115 47.0
FAN14G0917 Fragaria x ananassa HOM05D000001 ORTHO05D009574 2.2e-14 82.8 111 41.4
RcHm_v2.0_Chr2g0107851 Rosa chinensis HOM05D000007 ORTHO05D000017 2.9e-14 82.4 117 44.4
FvH4_6g14900 Fragaria vesca HOM05D000007 ORTHO05D000017 3.8e-14 82.0 111 41.4
RcHm_v2.0_Chr3g0468191 Rosa chinensis HOM05D000007 ORTHO05D000017 6.4e-14 81.3 141 37.6
FvH4_6g14972 Fragaria vesca HOM05D000007 ORTHO05D000017 1.9e-13 79.7 107 43.0
FvH4_6g14790 Fragaria vesca HOM05D000007 ORTHO05D000017 2.4e-13 79.3 115 41.7
FAN14G4843 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.4e-13 79.3 115 41.7
FAN23G0995 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.2e-13 79.0 112 47.3
RcHm_v2.0_Chr2g0107841 Rosa chinensis HOM05D000007 ORTHO05D000017 3.2e-13 79.0 119 44.5
FAN19G2319 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.5e-13 78.2 112 44.6
FvH4_1g18870 Fragaria vesca HOM05D000007 ORTHO05D000017 9.3e-13 77.4 110 41.8
RcHm_v2.0_Chr2g0107781 Rosa chinensis HOM05D000007 ORTHO05D000017 9.3e-13 77.4 116 44.8
FAN14G3180 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-12 77.0 107 42.1
FvH4_1g19580 Fragaria vesca HOM05D000007 ORTHO05D000017 2.1e-12 76.3 111 45.0
FvH4_3g14952 Fragaria vesca HOM05D000007 ORTHO05D000017 2.1e-12 76.3 120 41.7
FvH4_1g17550 Fragaria vesca HOM05D000007 ORTHO05D000017 2.7e-12 75.9 112 43.8
FvH4_1g17560 Fragaria vesca HOM05D000007 ORTHO05D000017 2.7e-12 75.9 110 44.5
FvH4_4g30361 Fragaria vesca HOM05D000007 ORTHO05D000017 2.7e-12 75.9 113 42.5
FAN11G0467 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-12 75.5 114 43.0
FAN12G1497 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-12 75.5 113 42.5
FvH4_6g14981 Fragaria vesca HOM05D000007 ORTHO05D000017 4.6e-12 75.1 123 40.7
FvH4_6g14991 Fragaria vesca HOM05D000007 ORTHO05D000017 4.6e-12 75.1 114 43.0
FAN16G1371 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.0e-12 74.7 120 42.5
FAN23G2883 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.0e-12 74.7 110 40.9
Prupe.2G278600 Prunus persica HOM05D000007 ORTHO05D000017 6.0e-12 74.7 119 44.5
FAN26G2435 Fragaria x ananassa HOM05D000007 ORTHO05D046541 7.9e-12 74.3 111 44.1
FAN26G3331 Fragaria x ananassa HOM05D000007 ORTHO05D046541 7.9e-12 74.3 111 44.1
RcHm_v2.0_Chr2g0109731 Rosa chinensis HOM05D000007 ORTHO05D000017 7.9e-12 74.3 101 42.6
FvH4_6g14980 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-11 73.9 111 41.4
FAN14G5511 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.0e-11 73.9 114 41.2
RcHm_v2.0_Chr1g0378141 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-11 73.2 113 44.2
FAN09G3188 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.3e-11 72.8 111 41.4
FAN26G1843 Fragaria x ananassa HOM05D000001 ORTHO05D009432 2.3e-11 72.8 108 42.6
RcHm_v2.0_Chr5g0059211 Rosa chinensis HOM05D000007 ORTHO05D000017 2.3e-11 72.8 115 44.3
RcHm_v2.0_Chr5g0076151 Rosa chinensis HOM05D000007 ORTHO05D000017 3.0e-11 72.4 121 40.5
FvH4_1g18470 Fragaria vesca HOM05D000007 ORTHO05D000017 3.9e-11 72.0 106 42.5
RcHm_v2.0_Chr2g0101031 Rosa chinensis HOM05D000007 ORTHO05D000017 3.9e-11 72.0 113 43.4
RcHm_v2.0_Chr5g0059551 Rosa chinensis HOM05D000007 ORTHO05D000017 3.9e-11 72.0 106 40.6
FvH4_1g19570 Fragaria vesca HOM05D000007 ORTHO05D045667 5.1e-11 71.6 111 41.4
FAN11G3461 Fragaria x ananassa HOM05D001622 ORTHO05D002989 5.1e-11 71.6 111 41.4
FAN24G1725 Fragaria x ananassa HOM05D000007 ORTHO05D046568 5.1e-11 71.6 125 40.8
FvH4_3g14941 Fragaria vesca HOM05D000007 ORTHO05D000017 1.1e-10 70.5 124 41.9
FAN14G3996 Fragaria x ananassa HOM05D000007 ORTHO05D046000 1.1e-10 70.5 117 41.9
FAN27G2044 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-10 70.5 122 40.2
FvH4_2g33500 Fragaria vesca HOM05D000007 ORTHO05D000017 1.9e-10 69.7 130 39.2
RcHm_v2.0_Chr5g0075691 Rosa chinensis HOM05D000007 ORTHO05D000017 1.9e-10 69.7 112 42.0
FvH4_3g15782 Fragaria vesca HOM05D000007 ORTHO05D000017 3.3e-10 68.9 112 41.1
FAN20G2365 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.3e-10 68.9 106 43.4
FAN01G1469 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.3e-10 68.6 104 41.3
FAN15G1356 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.3e-10 68.6 99 47.5
Prupe.2G278400 Prunus persica HOM05D000007 ORTHO05D000017 5.6e-10 68.2 120 40.8
RcHm_v2.0_Chr5g0044501 Rosa chinensis HOM05D000007 ORTHO05D000017 7.4e-10 67.8 118 39.8
FvH4_1g18380 Fragaria vesca HOM05D000007 ORTHO05D000017 9.6e-10 67.4 94 43.6
FvH4_3g14950 Fragaria vesca HOM05D000007 ORTHO05D000017 9.6e-10 67.4 114 41.2
FvH4_3g24880 Fragaria vesca HOM05D000007 ORTHO05D000017 9.6e-10 67.4 117 36.8
FAN21G3529 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.6e-10 67.4 117 36.8
FAN23G1980 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.6e-10 67.4 106 40.6
Duzib151G1207 Durio zibethinus HOM05D000007 ORTHO05D000017 1.3e-09 67.0 119 36.1
FvH4_2g36701 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-09 67.0 118 39.0
FAN11G0961 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-09 67.0 117 35.9
FAN11G2942 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-09 67.0 114 41.2
FvH4_3g14954 Fragaria vesca HOM05D000007 ORTHO05D000017 1.6e-09 66.6 126 40.5
FAN14G2654 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.6e-09 66.6 110 37.3
FAN19G3196 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.6e-09 66.6 107 39.3
FvH4_3g42490 Fragaria vesca HOM05D000007 ORTHO05D000017 3.7e-09 65.5 128 40.6
FAN11G2621 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.7e-09 65.5 128 40.6
FAN16G2932 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.7e-09 65.5 125 40.0
FAN26G2312 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.7e-09 65.5 101 41.6
FAN28G1020 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.7e-09 65.5 128 40.6
FAN11G3926 Fragaria x ananassa HOM05D000007 ORTHO05D025461 6.2e-09 64.7 154 31.8
RcHm_v2.0_Chr2g0086041 Rosa chinensis HOM05D000007 ORTHO05D013322 6.2e-09 64.7 108 40.7
RcHm_v2.0_Chr2g0122651 Rosa chinensis HOM05D000007 ORTHO05D013322 6.2e-09 64.7 108 40.7
CiPaw.07G037800 Carya illinoinensis HOM05D000007 ORTHO05D000017 8.2e-09 64.3 108 40.7
CiPaw.07G037900 Carya illinoinensis HOM05D000007 ORTHO05D000017 8.2e-09 64.3 112 41.1
FvH4_3g14940 Fragaria vesca HOM05D000007 ORTHO05D000017 8.2e-09 64.3 112 39.3
FAN03G2907 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-09 64.3 116 38.8
FAN25G0265 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-09 64.3 117 36.8
FAN25G0935 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-09 64.3 117 36.8
RcHm_v2.0_Chr5g0059291 Rosa chinensis HOM05D000007 ORTHO05D000017 8.2e-09 64.3 114 36.8
FvH4_1g13760 Fragaria vesca HOM05D000007 ORTHO05D035254 1.1e-08 63.9 106 38.7
FvH4_3g41860 Fragaria vesca HOM05D000007 ORTHO05D025461 1.1e-08 63.9 155 33.5
FAN16G0648 Fragaria x ananassa HOM05D000308 ORTHO05D000194 1.1e-08 63.9 155 33.5
RcHm_v2.0_Chr1g0361131 Rosa chinensis HOM05D000007 ORTHO05D000017 1.1e-08 63.9 106 36.8
CiPaw.07G037500 Carya illinoinensis HOM05D000007 ORTHO05D000017 1.4e-08 63.5 105 39.0
FAN19G0863 Fragaria x ananassa HOM05D000007 ORTHO05D045667 1.4e-08 63.5 110 40.0
FAN28G0093 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-08 63.5 120 40.8
Prupe.6G214600 Prunus persica HOM05D000007 ORTHO05D000017 1.4e-08 63.5 136 32.4
RcHm_v2.0_Chr5g0076031 Rosa chinensis HOM05D000007 ORTHO05D000017 1.4e-08 63.5 115 34.8
FAN06G0788 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.4e-08 62.8 111 37.8
FAN05G2397 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-08 62.4 109 37.6
RcHm_v2.0_Chr5g0059111 Rosa chinensis HOM05D000007 ORTHO05D000017 5.3e-08 61.6 107 39.3
FAN19G2602 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.9e-08 61.2 104 39.4
FAN26G1364 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.9e-08 61.2 120 40.0
FvH4_2g36710 Fragaria vesca HOM05D000007 ORTHO05D000017 9.0e-08 60.8 100 47.0
RcHm_v2.0_Chr5g0075931 Rosa chinensis HOM05D000007 ORTHO05D000017 9.0e-08 60.8 119 31.9
RcHm_v2.0_Chr7g0226431 Rosa chinensis HOM05D000007 ORTHO05D000017 9.0e-08 60.8 112 38.4
FvH4_3g32350 Fragaria vesca HOM05D000007 ORTHO05D000017 1.5e-07 60.1 110 36.4
FAN16G0625 Fragaria x ananassa HOM05D000007 ORTHO05D045626 1.5e-07 60.1 135 34.8
Manes.01G127300 Manihot esculenta HOM05D000007 ORTHO05D000017 1.5e-07 60.1 118 35.6
Lj4g0001610 Lotus japonicus HOM05D000007 ORTHO05D000017 2.0e-07 59.7 117 34.2
Ciclev10006734m.g Citrus clementina HOM05D000007 ORTHO05D000017 2.6e-07 59.3 113 32.7
RcHm_v2.0_Chr1g0380601 Rosa chinensis HOM05D000007 ORTHO05D000017 2.6e-07 59.3 108 33.3
CiPaw.07G037600 Carya illinoinensis HOM05D000007 ORTHO05D000017 3.4e-07 58.9 109 38.5
RcHm_v2.0_Chr1g0321661 Rosa chinensis HOM05D000007 ORTHO05D000017 3.4e-07 58.9 110 36.4
FvH4_1g13811 Fragaria vesca HOM05D000007 ORTHO05D000017 4.5e-07 58.5 95 37.9
FAN21G2880 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.5e-07 58.5 119 37.0
FAN25G0715 Fragaria x ananassa HOM05D000007 ORTHO05D025461 4.5e-07 58.5 95 35.8
FAN25G2324 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.5e-07 58.5 106 38.7
RcHm_v2.0_Chr7g0226441 Rosa chinensis HOM05D000007 ORTHO05D000017 4.5e-07 58.5 112 35.7
CiPaw.07G037700 Carya illinoinensis HOM05D000007 ORTHO05D000017 5.8e-07 58.2 108 39.8
FvH4_1g17581 Fragaria vesca HOM05D000007 ORTHO05D000017 5.8e-07 58.2 112 36.6
FvH4_3g42460 Fragaria vesca HOM05D000007 ORTHO05D000017 5.8e-07 58.2 119 37.0
FvH4_6g47401 Fragaria vesca HOM05D000007 ORTHO05D046000 5.8e-07 58.2 131 36.6
RcHm_v2.0_Chr6g0299781 Rosa chinensis HOM05D000007 ORTHO05D035269 5.8e-07 58.2 106 36.8
FAN03G2865 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.6e-07 57.8 111 37.8
FvH4_1g13860 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-06 57.4 110 39.1
FvH4_3g42360 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-06 57.4 128 32.8
FvH4_6g14994 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-06 57.4 102 42.2
FAN11G0597 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-06 57.0 124 33.1
FAN28G1795 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-06 57.0 124 33.1
Glyma.08G252300 Glycine max HOM05D000007 ORTHO05D000017 1.3e-06 57.0 126 31.7
Potri.001G318400 Populus trichocarpa HOM05D000007 ORTHO05D000017 1.3e-06 57.0 118 33.9
RcHm_v2.0_Chr7g0226091 Rosa chinensis HOM05D000007 ORTHO05D000017 1.3e-06 57.0 113 35.4
vmacro19993 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 1.3e-06 57.0 111 32.4
Ciclev10006995m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.7e-06 56.6 118 29.7
FvH4_2g40801 Fragaria vesca HOM05D000007 ORTHO05D035269 1.7e-06 56.6 113 31.0
FvH4_3g42420 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-06 56.6 118 29.7
FAN17G2535 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-06 56.6 77 45.5
Manes.03G145200 Manihot esculenta HOM05D000007 ORTHO05D000017 1.7e-06 56.6 115 35.7
FvH4_1g13850 Fragaria vesca HOM05D000007 ORTHO05D000017 2.2e-06 56.2 112 33.9
FvH4_3g42304 Fragaria vesca HOM05D000007 ORTHO05D000017 2.2e-06 56.2 113 38.1
FvH4_5g30990 Fragaria vesca HOM05D000007 ORTHO05D000017 2.2e-06 56.2 136 33.1
FAN11G3870 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.2e-06 56.2 113 38.1
FAN16G3706 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.2e-06 56.2 122 35.2
FAN18G1100 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.2e-06 56.2 136 33.1
FAN21G3249 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.2e-06 56.2 124 38.7
FAN25G0061 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.2e-06 56.2 101 37.6
FAN28G0209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.2e-06 56.2 113 38.1
VMungo1215G3073 Vigna mungo HOM05D000007 ORTHO05D000017 2.2e-06 56.2 109 36.7
FvH4_7g32350 Fragaria vesca HOM05D000007 ORTHO05D013322 2.9e-06 55.8 107 36.4
Glyma.17G027000 Glycine max HOM05D000007 ORTHO05D000017 2.9e-06 55.8 108 37.0
Medtr4g109280 Medicago truncatula HOM05D000007 ORTHO05D000017 2.9e-06 55.8 103 35.9
RcHm_v2.0_Chr5g0076061 Rosa chinensis HOM05D000007 ORTHO05D000017 2.9e-06 55.8 125 29.6
FvH4_6g19961 Fragaria vesca HOM05D000007 ORTHO05D000017 3.8e-06 55.5 107 35.5
Duzib213G0721 Durio zibethinus HOM05D000007 ORTHO05D000017 4.9e-06 55.1 125 33.6
Migut.G01259 Erythranthe guttata HOM05D000007 ORTHO05D000017 4.9e-06 55.1 116 32.8
FAN03G2734 Fragaria x ananassa HOM05D000007 ORTHO05D013322 4.9e-06 55.1 105 36.2
Migut.N00590 Erythranthe guttata HOM05D000007 ORTHO05D000017 8.4e-06 54.3 132 30.3
FAN25G2493 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.4e-06 54.3 113 32.7
Medtr3g034130 Medicago truncatula HOM05D000007 ORTHO05D000017 8.4e-06 54.3 114 35.1
Medtr8g013010 Medicago truncatula HOM05D000007 ORTHO05D000017 8.4e-06 54.3 110 35.5
Phvul.008G026000 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 8.4e-06 54.3 112 33.9
QL04p049972 Quercus lobata HOM05D000007 ORTHO05D000039 8.4e-06 54.3 108 32.4


User provided reference genes

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