Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 2.1e-214 749.2 510 100.0
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 3.9e-128 462.6 437 69.3
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 2.5e-119 433.3 526 66.7
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.2e-114 416.4 514 54.9
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.5e-111 407.5 536 62.9
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.9e-111 407.1 468 55.1
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.6e-110 404.1 501 59.7
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.1e-109 401.4 500 59.4
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 5.3e-109 399.1 470 61.7
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 2.1e-105 387.1 520 52.9
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 6.0e-105 385.6 441 54.2
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.6e-100 370.2 445 51.5
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 9.3e-98 361.7 481 52.8
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.4e-93 347.1 520 49.0
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.4e-93 347.1 423 52.2
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 2.2e-91 340.5 513 48.9
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.8e-91 339.7 431 51.0
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 6.1e-89 332.4 437 49.4
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.4e-85 321.2 530 45.8
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 4.5e-84 316.2 436 47.9
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 4.5e-84 316.2 436 47.9
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.9e-83 313.5 443 47.2
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 2.9e-83 313.5 441 47.6
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 8.5e-83 312.0 460 44.8
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.9e-82 310.8 426 47.9
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.5e-82 310.5 450 45.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 4.2e-82 309.7 477 45.7
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 2.1e-81 307.4 515 45.0
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 2.7e-81 307.0 457 45.1
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 2.3e-80 303.9 483 47.2
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.6e-79 300.4 487 54.4
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 9.7e-79 298.5 422 45.3
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 8.2e-78 295.4 439 46.2
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 3.4e-76 290.0 494 43.7
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 1.3e-75 288.1 464 44.0
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 2.9e-75 287.0 478 45.6
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 6.5e-75 285.8 430 44.0
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 6.5e-75 285.8 437 46.0
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 7.2e-74 282.3 438 42.2
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 7.2e-74 282.3 438 42.2
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.7e-73 279.6 433 44.8
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 8.0e-73 278.9 431 42.9
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 3.7e-70 270.0 400 46.2
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 4.8e-70 269.6 433 44.1
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 7.0e-69 265.8 422 42.7
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.2e-68 265.0 462 44.8
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-68 264.2 422 43.1
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 2.0e-68 264.2 489 42.7
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 2.6e-68 263.8 475 45.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.0e-67 261.9 518 38.4
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.8e-67 260.0 485 43.5
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 8.5e-67 258.8 436 41.3
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-66 258.5 478 45.0
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-66 258.5 478 45.0
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.5e-66 258.1 423 43.3
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 3.2e-66 256.9 463 42.3
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.2e-66 256.9 548 35.8
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 7.2e-66 255.8 502 47.4
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 8.0e-65 252.3 523 51.4
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.0e-64 251.9 476 40.8
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.4e-64 251.5 495 52.3
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 8.8e-64 248.8 470 44.5
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 3.7e-62 243.4 407 48.9
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.8e-61 241.1 424 41.3
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.4e-61 240.7 498 37.8
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 3.1e-61 240.4 511 40.3
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 7.0e-61 239.2 533 43.5
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 9.1e-61 238.8 490 41.2
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.2e-60 238.4 504 38.9
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.2e-60 238.4 398 42.2
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 2.0e-60 237.7 413 45.5
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.5e-60 236.9 360 46.7
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 3.5e-60 236.9 446 39.9
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.5e-58 231.5 499 38.3
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.5e-58 231.5 503 35.6
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.9e-58 231.1 361 46.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 4.2e-58 229.9 493 41.2
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.1e-57 227.6 531 37.5
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 8.0e-57 225.7 496 35.5
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.4e-56 224.9 528 37.5
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.3e-56 224.2 531 38.0
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 6.8e-56 222.6 451 38.4
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.3e-54 218.4 440 40.9
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.2e-54 217.6 549 43.9
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 4.8e-54 216.5 434 45.2
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 9.5e-50 202.2 527 40.8
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 6.1e-49 199.5 441 39.2
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.4e-48 198.4 582 34.7
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.4e-48 198.4 427 42.6
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.8e-48 198.0 497 34.6
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 2.3e-48 197.6 568 35.4
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 5.2e-48 196.4 477 35.2
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.6e-47 194.1 459 39.9
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.6e-47 194.1 508 35.8
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.6e-47 194.1 476 38.0
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.7e-47 193.0 543 35.4
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.3e-46 191.8 494 34.8
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.7e-46 191.4 555 35.0
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 3.7e-46 190.3 477 35.6
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 8.3e-46 189.1 427 37.9
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 4.1e-45 186.8 542 40.2
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.4e-45 186.4 521 32.4
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 5.4e-45 186.4 475 38.3
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.6e-44 184.9 474 43.7
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 2.0e-44 184.5 474 44.9
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 2.0e-44 184.5 475 37.1
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 4.5e-44 183.3 474 45.1
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 2.5e-42 177.6 474 44.9
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.6e-42 176.4 491 37.7
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.8e-41 174.1 458 33.4
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 4.7e-41 173.3 479 33.6
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 8.0e-41 172.6 613 31.6
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.0e-40 172.2 613 31.6
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.4e-39 167.2 469 33.0
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 5.8e-39 166.4 455 36.0
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 9.8e-39 165.6 487 39.4
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 9.8e-39 165.6 487 39.4
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 9.8e-39 165.6 345 37.7
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.3e-38 165.2 429 37.3
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.7e-38 164.9 504 33.3
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.2e-38 164.5 164 54.9
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.9e-38 164.1 494 36.2
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 4.1e-37 160.2 489 42.1
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.7e-36 157.5 511 36.6
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.0e-35 155.6 525 32.6
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 8.6e-35 152.5 462 35.7
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 6.2e-33 146.4 529 30.6
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.1e-32 145.6 351 32.8
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.2e-31 142.1 451 33.5
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.6e-31 141.0 508 37.0
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.4e-31 140.6 193 48.7
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 5.8e-31 139.8 454 30.8
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.3e-30 138.7 380 40.5
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 8.3e-30 136.0 444 30.0
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 8.3e-30 136.0 164 64.6
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.9e-29 134.8 445 32.1
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 4.1e-29 133.7 499 29.1
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 7.0e-29 132.9 451 31.0
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.8e-28 129.4 153 51.0
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.3e-27 128.6 502 27.9
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.1e-26 125.6 555 29.7
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 1.5e-26 125.2 498 28.7
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 3.3e-26 124.0 432 32.4
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.8e-24 118.2 158 48.1
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.4e-23 113.6 435 29.7
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 9.9e-23 112.5 137 50.4
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.3e-22 112.1 431 29.2
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 7.1e-21 106.3 503 28.4
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.9e-19 100.5 465 28.0
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 6.6e-19 99.8 434 29.5
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 1.1e-18 99.0 472 28.2
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 5.6e-18 96.7 452 39.8
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.1e-17 94.7 481 29.5
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 8.1e-17 92.8 155 43.2
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.1e-17 92.8 554 26.5
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 4.0e-16 90.5 434 29.0
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 8.9e-16 89.4 449 28.5
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.3e-14 85.5 160 37.5
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.2e-14 84.7 433 27.3
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.1e-13 82.4 442 26.2
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.9e-13 81.6 169 39.6
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 6.0e-12 76.6 451 31.5
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.0e-11 75.9 398 25.9
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 2.3e-11 74.7 78 56.4
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 8.7e-11 72.8 450 26.4
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.3e-09 68.9 391 34.3
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.6e-09 68.6 89 49.4
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.6e-09 68.6 138 37.7
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.6e-09 67.4 146 34.2
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.1e-09 66.2 89 48.3
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 1.1e-08 65.9 221 35.3
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.8e-08 65.1 188 35.6
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 5.3e-08 63.5 188 35.1
Lalb_Chr05g0216141 Lupinus albus HOM05D003733 ORTHO05D004035 6.9e-08 63.2 43 76.7
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.3e-06 58.9 161 31.7
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 2.2e-06 58.2 150 32.0
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 3.8e-06 57.4 134 39.6
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 8.4e-06 56.2 52 53.8
Pp3c20_3960 Physcomitrium patens HOM05D025130 ORTHO05D030134 8.4e-06 56.2 167 29.3
Pp3c20_4020 Physcomitrium patens HOM05D025130 ORTHO05D030134 8.4e-06 56.2 167 29.3


User provided reference genes

Program Settings