Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 6.5e-140 500.7 258 100.0
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.9e-91 339.7 225 75.1
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 2.2e-87 326.2 221 70.6
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 4.6e-85 318.5 221 68.8
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 4.0e-81 305.4 223 67.3
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.0e-80 303.1 231 63.6
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 1.1e-78 297.4 225 64.0
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.2e-78 295.8 250 60.4
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 5.3e-73 278.5 226 63.3
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 9.0e-73 277.7 220 63.2
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 2.2e-71 273.1 227 62.1
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 4.9e-71 271.9 226 59.3
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.7e-69 266.2 227 58.6
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 2.7e-69 266.2 226 60.2
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 1.9e-67 260.0 224 57.1
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 4.3e-67 258.8 226 56.6
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 4.3e-67 258.8 226 56.6
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 1.3e-66 257.3 185 69.7
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.6e-66 256.9 226 58.0
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 1.6e-66 256.9 226 58.0
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 2.8e-66 256.1 226 57.5
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.2e-64 250.8 221 55.7
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.6e-64 249.6 225 55.6
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 5.8e-64 248.4 223 58.3
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.2e-63 246.5 225 55.1
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.2e-63 246.5 235 52.8
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 6.4e-63 245.0 227 56.8
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.1e-62 244.2 226 54.9
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.2e-61 240.7 208 59.6
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 1.3e-60 237.3 221 53.8
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.8e-60 236.9 219 53.9
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 3.0e-60 236.1 215 55.3
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.5e-59 233.8 223 50.2
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 4.3e-59 232.3 225 54.7
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.3e-58 230.7 224 53.1
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 5.8e-56 221.9 217 49.3
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.3e-55 220.7 220 52.3
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 1.3e-55 220.7 221 49.3
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 2.9e-55 219.5 229 48.9
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 2.9e-55 219.5 219 49.3
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 4.9e-55 218.8 219 48.9
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.4e-54 217.2 220 49.5
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 2.5e-54 216.5 225 52.0
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 5.5e-54 215.3 217 47.9
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 2.7e-53 213.0 222 49.5
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 3.5e-53 212.6 221 48.0
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.3e-52 210.7 231 48.9
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 2.3e-52 209.9 218 46.8
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 3.0e-52 209.5 220 45.9
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.1e-51 207.6 219 48.4
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 1.5e-51 207.2 224 47.3
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.5e-51 207.2 223 49.8
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 9.6e-51 204.5 226 50.4
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 2.1e-50 203.4 184 56.5
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.1e-50 203.4 223 48.4
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 6.3e-50 201.8 221 47.5
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 8.2e-50 201.4 217 47.5
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 6.9e-49 198.4 221 46.2
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 9.0e-49 198.0 219 47.0
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 9.0e-49 198.0 218 45.9
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.2e-48 197.6 247 45.7
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.5e-48 197.2 223 44.4
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.5e-48 197.2 223 44.4
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 1.5e-48 197.2 204 49.0
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.5e-48 197.2 222 45.0
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.0e-48 196.8 209 50.7
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 2.0e-48 196.8 221 45.7
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 3.4e-48 196.1 228 46.1
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 4.5e-48 195.7 218 44.5
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 7.6e-48 194.9 223 43.9
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 7.6e-48 194.9 223 43.9
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 7.6e-48 194.9 223 43.9
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 7.6e-48 194.9 234 46.2
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 2.2e-47 193.4 221 43.0
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.2e-47 193.4 227 45.4
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 5.0e-47 192.2 221 44.3
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 1.9e-46 190.3 218 45.4
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 4.2e-46 189.1 256 42.6
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 5.5e-46 188.7 228 43.4
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 5.5e-46 188.7 218 44.5
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 9.3e-46 188.0 214 47.7
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 1.6e-45 187.2 223 40.8
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.7e-45 186.4 219 43.8
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 3.5e-45 186.0 245 42.9
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.3e-44 184.1 234 43.6
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.3e-44 183.3 218 43.6
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 2.3e-44 183.3 230 43.5
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 3.0e-44 183.0 276 39.9
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 5.1e-44 182.2 221 43.9
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 2.5e-43 179.9 199 48.2
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 7.4e-43 178.3 219 42.5
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 7.4e-43 178.3 214 43.9
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.2e-42 176.8 220 40.5
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 2.8e-42 176.4 204 47.1
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 4.8e-42 175.6 243 37.4
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.8e-42 175.6 226 42.5
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 6.3e-42 175.3 218 43.1
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.4e-41 174.1 214 43.0
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 3.1e-41 172.9 210 42.4
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 6.9e-41 171.8 222 43.7
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.5e-40 170.6 213 43.2
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 2.6e-40 169.9 228 43.4
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 5.9e-40 168.7 212 42.9
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 1.0e-39 167.9 214 42.5
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 8.5e-39 164.9 229 40.2
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 2.5e-38 163.3 222 39.2
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 5.5e-38 162.2 205 42.9
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 5.5e-38 162.2 205 42.9
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 9.4e-38 161.4 223 38.1
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.6e-37 159.5 214 38.8
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 4.6e-37 159.1 155 52.3
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.0e-36 157.9 209 41.1
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 2.3e-36 156.8 243 41.2
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 3.0e-36 156.4 218 42.2
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 8.8e-36 154.8 199 46.2
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 2.5e-35 153.3 223 36.8
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 2.5e-35 153.3 223 36.8
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.7e-34 150.6 251 35.1
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.2e-34 150.2 174 47.7
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 8.2e-34 148.3 206 39.3
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.5e-32 144.1 117 59.0
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 5.5e-30 135.6 134 50.0
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.5e-27 127.5 181 37.6
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.6e-24 116.7 209 32.1
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-23 114.0 58 89.7
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-23 114.0 58 89.7
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 8.5e-23 111.7 172 38.4
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 2.5e-22 110.2 223 32.7
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 9.4e-22 108.2 78 66.7
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 3.6e-21 106.3 82 57.3
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 3.6e-21 106.3 87 51.7
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 4.7e-21 105.9 137 44.5
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 9.7e-19 98.2 76 57.9
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 1.3e-18 97.8 177 33.3
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 2.2e-18 97.1 123 45.5
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 8.2e-18 95.1 164 37.2
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.4e-17 94.4 110 43.6
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 4.1e-17 92.8 110 43.6
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 4.2e-14 82.8 102 42.2
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 1.6e-13 80.9 65 55.4
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 6.1e-13 79.0 228 28.9
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.8e-12 77.4 223 29.1
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 1.5e-11 74.3 82 41.5
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 3.4e-11 73.2 205 27.3
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 4.8e-10 69.3 84 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 7.0e-09 65.5 126 32.5
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 2.9e-07 60.1 58 46.6


User provided reference genes

Program Settings