Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 2.5e-295 1018.1 540 100.0
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 4.9e-182 641.7 550 67.6
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 2.2e-177 626.3 550 66.9
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 9.1e-136 488.0 612 52.9
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 3.5e-119 433.0 591 50.3
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 4.6e-119 432.6 591 50.3
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.4e-112 411.0 601 47.4
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 8.9e-107 391.7 397 59.4
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 1.9e-96 357.5 587 45.0
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 4.2e-96 356.3 585 45.1
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 6.0e-95 352.4 581 45.6
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 3.9e-94 349.7 575 45.4
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 2.1e-87 327.4 549 43.2
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 2.1e-84 317.4 294 59.5
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 4.5e-82 309.7 484 44.2
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 7.6e-82 308.9 321 56.1
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.7e-81 307.8 522 43.7
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 1.1e-80 305.1 522 43.5
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 3.9e-78 296.6 561 40.1
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 1.5e-77 294.7 537 42.3
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 3.3e-77 293.5 314 53.5
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 6.2e-76 289.3 534 41.0
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.1e-75 288.5 315 54.0
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 6.9e-75 285.8 557 39.3
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.2e-74 285.0 561 40.6
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 1.5e-74 284.6 580 41.2
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.9e-73 280.4 324 52.5
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 7.1e-72 275.8 470 41.9
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 7.1e-72 275.8 324 51.5
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 1.6e-71 274.6 293 56.0
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 4.6e-71 273.1 460 42.0
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 6.0e-71 272.7 569 40.4
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.3e-70 270.8 619 37.5
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.3e-70 270.8 619 37.5
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 3.9e-70 270.0 451 41.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 3.9e-70 270.0 315 53.3
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 8.7e-70 268.9 458 41.5
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 1.1e-69 268.5 331 52.9
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 3.3e-69 266.9 298 53.7
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 5.6e-69 266.2 559 41.3
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 9.6e-69 265.4 451 41.7
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.8e-68 263.1 448 41.3
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 3.1e-67 260.4 385 44.4
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 4.0e-67 260.0 462 42.6
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 4.0e-67 260.0 415 44.3
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 2.0e-66 257.7 297 53.5
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 2.0e-66 257.7 297 53.5
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 5.8e-66 256.1 553 38.5
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 1.0e-65 255.4 328 50.0
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 2.2e-65 254.2 399 45.6
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.9e-65 253.8 544 39.5
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 8.4e-65 252.3 566 37.6
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 9.3e-64 248.8 541 38.6
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.6e-63 248.1 593 37.6
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 7.9e-63 245.7 292 51.7
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 7.9e-63 245.7 423 41.6
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.0e-62 245.4 340 49.1
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 1.3e-62 245.0 338 47.3
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 6.7e-62 242.7 590 37.6
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.3e-61 240.4 458 40.0
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 3.3e-61 240.4 290 51.4
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 5.7e-61 239.6 486 38.7
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 5.7e-61 239.6 311 48.9
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 1.6e-60 238.0 306 47.4
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 1.8e-59 234.6 617 34.4
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 3.1e-59 233.8 433 41.3
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.3e-59 233.0 305 46.9
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 5.3e-59 233.0 327 48.0
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.5e-58 231.5 356 43.5
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 2.6e-58 230.7 342 46.8
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.6e-58 230.7 337 47.2
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 4.5e-58 229.9 352 45.7
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 7.7e-58 229.2 305 46.2
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 2.2e-57 227.6 616 34.3
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.9e-57 227.3 308 49.7
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 1.1e-56 225.3 296 51.7
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 5.5e-56 223.0 291 45.7
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 9.4e-56 222.2 312 47.8
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 3.6e-55 220.3 365 41.1
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 7.9e-55 219.2 557 35.0
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.0e-54 218.8 422 38.2
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 1.8e-54 218.0 307 43.6
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 6.7e-54 216.1 358 43.3
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 1.3e-52 211.8 333 45.9
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.3e-52 211.8 349 41.8
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 8.2e-52 209.1 289 46.4
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.4e-51 208.4 345 43.2
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 9.1e-51 205.7 548 37.8
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 1.5e-50 204.9 505 35.6
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 5.0e-49 199.9 383 41.0
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 1.1e-48 198.7 548 34.5
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 1.1e-48 198.7 508 35.4
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.9e-48 198.0 257 46.7
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 3.6e-47 193.7 487 35.1
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 1.4e-46 191.8 564 34.8
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 2.3e-46 191.0 577 35.2
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 3.3e-45 187.2 513 35.5
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 3.3e-45 187.2 608 34.0
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 4.8e-44 183.3 310 44.5
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 1.8e-43 181.4 312 44.6
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 1.8e-43 181.4 312 44.6
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 4.1e-43 180.3 582 33.0
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 5.5e-40 169.9 257 43.2
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 1.6e-39 168.3 223 44.8
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 3.6e-39 167.2 563 32.7
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 4.7e-39 166.8 534 35.0
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 1.0e-38 165.6 559 33.8
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 1.0e-38 165.6 559 33.8
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 2.3e-38 164.5 281 42.3
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 1.1e-37 162.2 507 33.1
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.3e-36 158.7 396 36.4
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.3e-36 158.7 250 44.4
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 3.7e-36 157.1 299 38.8
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 4.8e-36 156.8 256 45.3
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 2.2e-33 147.9 235 42.6
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 5.0e-33 146.7 283 40.3
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 1.5e-32 145.2 552 31.0
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.8e-30 138.3 197 44.2
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 2.0e-26 124.8 290 34.1
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.0e-25 122.5 285 34.7
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 6.8e-22 109.8 199 40.7
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 3.1e-19 100.9 265 34.7
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.0e-18 98.2 320 29.4
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.3e-17 95.5 259 27.8
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.5e-13 82.0 325 28.9
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 2.4e-11 74.7 434 24.2
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 3.2e-11 74.3 175 33.7
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 1.0e-09 69.3 76 43.4
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 1.9e-08 65.1 47 66.0
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 2.8e-07 61.2 77 46.8
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 8.0e-07 59.7 43 65.1
TAR625G0743 Trochodendron aralioides HOM05D005322 ORTHO05D006746 2.3e-06 58.2 87 44.8


User provided reference genes

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