Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 0.0e+00 1176.4 611 100.0
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 2.5e-283 978.4 612 83.3
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 9.6e-283 976.5 616 84.1
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.3e-251 871.7 615 75.1
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 4.5e-248 861.3 618 75.1
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.3e-247 859.8 618 75.1
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.0e-247 857.8 621 74.1
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.0e-236 823.5 581 78.0
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.0e-227 792.7 584 72.6
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.6e-224 783.1 621 68.3
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.5e-222 776.5 617 67.3
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 4.1e-217 758.4 621 67.6
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 9.1e-217 757.3 617 65.8
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.9e-212 740.7 618 66.8
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.4e-209 733.4 617 65.3
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 1.5e-206 723.4 617 63.2
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.3e-206 721.8 615 62.9
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 3.0e-204 715.7 684 58.3
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 3.0e-204 715.7 617 62.7
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 1.8e-201 706.4 618 62.5
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.0e-201 704.5 571 66.2
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 5.0e-199 698.4 617 63.0
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.9e-198 696.4 626 61.7
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 8.0e-197 691.0 619 63.5
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 9.8e-195 684.1 654 59.6
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 1.2e-192 677.2 619 61.1
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 6.8e-188 661.4 622 60.1
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.4e-187 658.7 619 60.1
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.7e-186 655.6 617 60.3
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 7.3e-182 641.3 630 61.0
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.2e-181 640.6 619 58.6
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 2.1e-181 639.8 629 57.9
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 4.7e-181 638.6 617 58.0
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 4.0e-180 635.6 626 57.3
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 6.8e-180 634.8 477 69.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.5e-179 633.6 620 59.8
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 2.6e-179 632.9 509 67.2
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 5.8e-179 631.7 622 57.2
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 9.9e-179 630.9 621 57.5
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.7e-178 630.2 622 57.2
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 9.2e-177 624.4 611 55.8
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 3.5e-176 622.5 624 55.8
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 6.6e-175 618.2 641 55.4
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 1.9e-174 616.7 625 57.4
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 7.3e-174 614.8 621 57.6
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 3.1e-172 609.4 566 60.1
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 3.1e-172 609.4 626 56.5
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 9.0e-172 607.8 650 54.8
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.7e-170 603.6 717 50.3
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 2.2e-170 603.2 630 57.3
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.9e-170 602.8 633 55.8
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.1e-169 600.9 630 54.9
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.9e-169 600.1 717 50.6
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 4.2e-169 599.0 632 54.6
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 2.5e-166 589.7 631 54.5
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 3.3e-166 589.3 631 54.5
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.1e-164 584.3 651 53.1
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 6.9e-164 581.6 683 50.4
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 6.9e-164 581.6 683 50.4
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 9.0e-164 581.3 624 55.6
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.2e-163 580.9 619 54.3
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 7.6e-163 578.2 584 56.7
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.4e-161 573.9 626 55.9
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 5.4e-161 572.0 628 53.3
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 1.6e-160 570.5 621 53.8
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 6.0e-160 568.5 675 50.7
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 5.6e-158 562.0 620 53.5
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 9.0e-156 554.7 649 53.6
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 4.5e-155 552.4 622 53.4
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 9.9e-155 551.2 626 53.2
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 3.8e-154 549.3 620 50.6
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 4.9e-154 548.9 623 52.3
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 4.9e-154 548.9 622 52.3
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 2.3e-151 540.0 609 52.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.5e-150 537.3 613 51.5
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.9e-150 537.0 656 51.2
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.4e-148 530.8 619 51.1
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.2e-147 527.7 616 51.3
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 1.7e-146 523.9 634 51.4
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 3.9e-143 512.7 613 49.3
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 6.7e-143 511.9 636 49.8
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 1.5e-142 510.8 628 50.2
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 1.5e-142 510.8 628 50.2
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 2.8e-141 506.5 619 50.4
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 6.3e-141 505.4 617 50.9
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.4e-140 504.2 610 51.8
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 9.0e-140 501.5 628 51.0
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 1.2e-139 501.1 649 49.0
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.7e-138 497.3 632 49.2
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.1e-137 494.6 628 49.2
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.9e-137 493.8 628 49.4
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 5.1e-135 485.7 620 50.0
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 2.0e-134 483.8 622 47.7
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 5.3e-132 475.7 587 50.6
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 2.8e-125 453.4 413 60.0
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 4.2e-121 439.5 622 46.6
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 2.1e-120 437.2 618 46.8
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 3.0e-119 433.3 463 54.4
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.0e-107 394.0 364 61.0
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.0e-107 394.0 580 44.8
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 7.7e-107 392.1 658 43.3
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.6e-104 384.4 419 52.3
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.2e-88 331.6 544 41.4
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.0e-87 328.6 705 36.3
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.8e-80 303.9 312 55.4
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.7e-77 294.7 233 67.4
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 3.3e-73 280.4 487 40.7
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.6e-56 224.9 299 43.5
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 9.3e-52 209.1 286 44.4
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 3.0e-50 204.1 641 30.3
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.4e-47 194.5 280 47.9
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.0e-42 177.6 186 52.7
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 1.5e-38 165.2 139 64.0
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 8.4e-37 159.5 115 73.0
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 7.1e-36 156.4 501 30.3
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 5.1e-34 150.2 183 48.1
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 5.7e-33 146.7 670 26.0
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 9.6e-33 146.0 588 25.5
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.6e-32 145.2 117 62.4
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 3.1e-31 141.0 183 48.1
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.3e-31 140.2 174 48.9
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.5e-30 138.7 538 27.3
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 2.2e-29 134.8 154 53.2
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 6.5e-29 133.3 142 57.7
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.4e-29 132.9 133 54.1
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.3e-26 125.6 108 61.1
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 7.4e-25 119.8 134 50.7
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.7e-24 117.5 75 72.0
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 2.4e-23 114.8 186 43.5
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.0e-18 99.4 95 64.2
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.7e-16 90.9 79 53.2
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 5.9e-14 83.6 165 40.0
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 5.0e-13 80.5 160 41.9
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 1.1e-12 79.3 69 58.0
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 3.2e-12 77.8 82 50.0
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 2.1e-11 75.1 74 59.5
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.3e-08 65.9 49 63.3


User provided reference genes

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