Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 8.2e-112 407.1 215 100.0
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 2.9e-93 345.5 213 85.0
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 2.4e-87 325.9 212 81.6
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 2.6e-86 322.4 212 80.2
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.2e-76 288.5 215 70.2
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 2.3e-74 282.7 213 70.4
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 9.1e-71 270.8 213 71.4
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 1.2e-70 270.4 213 70.4
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 8.3e-64 247.7 210 64.3
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 5.4e-63 245.0 211 62.1
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 9.2e-63 244.2 212 62.7
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 1.6e-62 243.4 213 61.5
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.7e-61 240.0 216 59.7
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 2.9e-61 239.2 213 61.0
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 8.6e-61 237.7 212 61.3
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.1e-60 237.3 210 60.5
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.9e-60 236.5 212 60.8
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 5.6e-60 235.0 212 59.4
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.2e-59 233.8 214 59.3
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 6.1e-59 231.5 212 59.9
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.0e-58 230.7 209 58.9
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.3e-58 229.6 212 58.0
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 4.0e-58 228.8 200 62.5
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 1.5e-57 226.9 213 58.2
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 2.0e-57 226.5 212 58.0
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 9.8e-57 224.2 211 57.3
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 2.9e-56 222.6 216 58.8
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 3.7e-56 222.2 212 57.1
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 3.7e-56 222.2 212 58.0
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 6.4e-56 221.5 215 55.3
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.1e-55 220.7 212 55.2
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 3.2e-55 219.2 213 55.4
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 4.1e-55 218.8 213 55.9
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 4.1e-55 218.8 212 57.1
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 9.2e-55 217.6 213 54.5
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 1.6e-54 216.9 218 56.0
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 3.5e-54 215.7 200 59.0
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.6e-54 215.3 209 55.5
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 5.9e-54 214.9 212 55.2
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 7.8e-54 214.5 212 55.7
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.7e-53 213.4 208 56.7
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 3.0e-53 212.6 203 57.1
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.0e-53 212.6 217 55.8
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 5.6e-52 208.4 199 56.8
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 5.6e-52 208.4 212 54.7
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 9.5e-52 207.6 212 54.7
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 1.2e-51 207.2 213 53.5
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.2e-51 207.2 213 53.1
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.6e-51 206.8 214 53.3
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 3.6e-51 205.7 210 54.8
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 3.6e-51 205.7 213 54.9
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 4.7e-51 205.3 217 50.7
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 8.0e-51 204.5 213 53.1
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.4e-50 203.8 214 52.3
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 3.1e-50 202.6 213 51.6
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 3.1e-50 202.6 206 54.4
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.1e-50 202.6 214 52.8
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 4.0e-50 202.2 208 53.8
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 5.2e-50 201.8 211 53.6
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 6.8e-50 201.4 214 52.3
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 5.8e-49 198.4 211 53.1
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 9.8e-49 197.6 214 52.3
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 1.7e-48 196.8 213 52.1
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 2.9e-48 196.1 212 52.4
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 3.7e-48 195.7 214 50.5
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 3.7e-48 195.7 211 52.1
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.9e-48 195.3 213 51.6
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 4.9e-48 195.3 206 52.9
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 6.4e-48 194.9 215 52.1
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 6.4e-48 194.9 211 53.6
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 8.3e-48 194.5 198 54.5
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 8.3e-48 194.5 198 54.5
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 1.1e-47 194.1 215 50.7
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 1.1e-47 194.1 215 49.3
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 1.9e-47 193.4 215 51.6
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 2.4e-47 193.0 198 54.5
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 2.4e-47 193.0 215 49.8
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 4.1e-47 192.2 211 52.6
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 5.4e-47 191.8 210 51.4
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 7.0e-47 191.4 215 54.4
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 9.2e-47 191.0 212 49.5
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 9.2e-47 191.0 199 53.8
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 9.2e-47 191.0 211 52.1
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 1.2e-46 190.7 195 54.9
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 1.6e-46 190.3 198 54.0
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 2.0e-46 189.9 212 49.5
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.7e-46 189.5 211 51.7
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 4.6e-46 188.7 212 48.6
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 6.0e-46 188.3 194 54.1
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 6.0e-46 188.3 202 51.0
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 7.8e-46 188.0 216 51.9
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 1.7e-45 186.8 210 49.0
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.3e-45 186.4 213 48.8
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 2.3e-45 186.4 212 49.1
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 3.0e-45 186.0 216 50.0
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 3.9e-45 185.7 210 50.5
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 3.9e-45 185.7 217 49.8
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 3.3e-44 182.6 215 48.4
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 5.6e-44 181.8 213 49.3
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 1.2e-43 180.6 213 47.9
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.6e-43 180.3 213 49.8
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 2.8e-43 179.5 211 49.3
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 1.8e-42 176.8 215 49.8
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 1.5e-41 173.7 213 48.4
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 7.5e-41 171.4 202 48.5
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 7.5e-41 171.4 221 49.3
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 7.5e-41 171.4 186 52.7
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 7.5e-41 171.4 214 48.1
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 9.8e-41 171.0 219 44.7
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.3e-40 170.6 211 50.2
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 2.9e-40 169.5 220 44.1
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 3.7e-40 169.1 210 45.2
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 3.7e-40 169.1 212 45.3
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.1e-39 167.5 216 46.3
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 1.4e-39 167.2 212 43.9
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 1.9e-39 166.8 216 46.8
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 4.1e-39 165.6 202 47.0
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 7.1e-39 164.9 214 44.9
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 7.1e-39 164.9 202 46.5
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 7.8e-38 161.4 202 46.0
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 1.0e-37 161.0 215 44.7
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 1.7e-37 160.2 217 45.6
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 4.3e-36 155.6 215 46.0
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 5.6e-36 155.2 202 45.5
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 7.3e-36 154.8 209 44.5
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.2e-35 154.1 200 45.0
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.6e-35 153.7 201 44.8
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 4.7e-35 152.1 221 41.2
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 8.1e-35 151.4 215 41.9
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 1.8e-34 150.2 213 42.3
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 5.2e-34 148.7 213 42.3
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.5e-33 147.1 140 54.3
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.9e-32 142.9 215 41.4
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 4.9e-32 142.1 165 50.9
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 6.4e-32 141.7 190 44.2
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 8.4e-32 141.4 210 42.9
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 9.2e-31 137.9 216 42.1
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 2.1e-30 136.7 213 41.3
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 2.1e-30 136.7 209 41.6
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.3e-29 134.0 208 40.4
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 5.6e-28 128.6 220 40.0
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 8.9e-26 121.3 219 38.8
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.5e-25 120.6 220 37.3
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 7.6e-25 118.2 202 36.1
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 9.9e-25 117.9 192 37.0
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 1.9e-23 113.6 118 52.5
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 2.7e-22 109.8 115 49.6
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 6.6e-21 105.1 209 34.9
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.3e-20 102.8 137 45.3
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 3.6e-19 99.4 211 34.6
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.2e-17 94.4 136 41.9
FAN28G2101 Fragaria x ananassa HOM05D004648 ORTHO05D005782 4.5e-17 92.4 57 80.7
BolC6t39019H Brassica oleracea HOM05D004648 ORTHO05D031748 3.8e-08 62.8 63 52.4


User provided reference genes

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