Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 0.0e+00 1253.4 650 100.0
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 0.0e+00 1098.2 641 88.1
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 0.0e+00 1090.1 637 86.5
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 2.0e-299 1031.9 665 80.8
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.8e-288 995.0 653 78.7
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.9e-284 982.2 652 78.2
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 4.1e-284 981.1 653 77.9
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.5e-273 946.0 620 79.2
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.7e-266 922.5 656 73.2
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 6.9e-263 910.6 652 71.5
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 2.0e-262 909.1 647 72.3
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 3.5e-259 898.3 652 71.0
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 2.1e-251 872.5 657 70.5
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 3.9e-250 868.2 651 68.5
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 3.7e-248 861.7 644 68.9
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.2e-246 856.7 637 69.5
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.8e-242 842.8 649 68.4
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 2.3e-242 842.4 654 66.7
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 3.9e-242 841.6 657 67.6
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 5.7e-241 837.8 644 67.7
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 9.7e-241 837.0 661 66.1
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 8.2e-240 833.9 665 66.0
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 8.2e-240 833.9 651 64.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 4.5e-238 828.2 659 65.3
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 2.9e-237 825.5 650 66.2
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.6e-235 819.7 648 65.3
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 6.1e-235 817.8 650 65.1
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 3.0e-234 815.5 651 65.0
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 3.0e-234 815.5 651 65.0
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 5.1e-234 814.7 648 65.6
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.3e-232 810.1 654 65.3
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 3.7e-232 808.5 629 68.2
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 4.8e-232 808.1 638 64.6
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 1.8e-231 806.2 651 64.8
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 5.3e-231 804.7 651 65.4
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.2e-230 803.5 673 64.0
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 1.5e-230 803.1 670 64.2
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 2.0e-230 802.7 657 64.8
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 7.2e-228 794.3 650 63.4
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 7.2e-228 794.3 665 63.9
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 2.7e-227 792.3 663 62.7
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.4e-226 790.0 653 65.5
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 3.9e-226 788.5 654 65.0
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 2.2e-224 782.7 643 61.3
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 2.8e-224 782.3 648 63.4
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.7e-224 781.9 657 64.7
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.1e-223 780.4 654 64.2
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 2.4e-223 779.2 656 63.7
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 7.0e-223 777.7 650 63.8
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 4.5e-222 775.0 664 63.0
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 4.5e-222 775.0 655 64.3
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 7.7e-222 774.2 649 63.3
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 8.5e-221 770.8 646 63.2
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.1e-220 770.4 650 63.7
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.6e-219 766.5 643 62.8
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 2.1e-219 766.1 644 64.0
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 8.0e-219 764.2 643 63.6
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.0e-217 759.6 659 60.2
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.2e-216 756.1 648 62.5
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.8e-216 755.7 698 60.0
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.1e-215 753.8 649 61.6
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 2.4e-215 752.7 665 60.9
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 2.4e-215 752.7 648 61.4
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 1.6e-214 750.0 646 61.9
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 2.0e-214 749.6 652 61.7
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.3e-213 746.9 658 59.0
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.1e-212 743.8 650 60.5
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 2.5e-212 742.7 678 59.4
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 7.2e-212 741.1 650 61.4
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 3.6e-211 738.8 656 60.1
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 3.6e-211 738.8 654 61.6
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 4.7e-211 738.4 644 60.7
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.4e-210 736.9 662 60.9
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 2.0e-209 733.0 652 62.1
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 4.1e-207 725.3 687 59.2
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 2.9e-205 719.2 651 59.4
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 3.8e-205 718.8 615 62.0
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 2.1e-203 713.0 657 60.0
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 2.3e-202 709.5 653 60.0
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.1e-199 700.7 535 65.2
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.9e-196 689.9 527 67.6
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 2.3e-194 682.9 657 58.8
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 8.9e-194 681.0 496 69.4
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.3e-192 674.9 566 63.6
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-190 670.2 591 60.9
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 1.0e-189 667.5 685 54.3
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.7e-184 650.2 653 56.2
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 4.9e-176 622.1 527 64.5
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 8.3e-176 621.3 680 52.4
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 8.6e-173 611.3 666 51.4
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 7.3e-172 608.2 505 62.8
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 4.0e-170 602.4 650 49.8
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 1.2e-169 600.9 499 60.9
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 6.2e-163 578.6 636 52.2
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.1e-159 567.8 694 47.7
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.2e-158 564.3 486 65.2
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.7e-157 560.5 603 52.6
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.3e-136 491.1 644 44.9
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 6.4e-136 488.8 522 52.9
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.6e-134 484.2 441 62.6
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.8e-114 417.5 749 36.3
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.8e-109 401.0 692 39.0
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 2.8e-107 393.7 290 65.5
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 7.0e-106 389.0 289 71.6
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.9e-103 380.9 387 58.1
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.5e-100 371.3 586 41.3
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 3.7e-99 366.7 335 62.4
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 3.1e-90 337.0 288 63.9
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 1.6e-89 334.7 338 55.0
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.9e-87 327.8 648 36.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 6.1e-86 322.8 286 61.9
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.3e-79 300.4 418 47.6
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 1.2e-78 298.5 515 38.6
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.4e-74 285.0 331 50.5
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.7e-65 254.2 204 66.7
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 6.6e-64 249.6 169 72.8
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.3e-59 235.3 379 43.3
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 1.4e-58 231.9 353 43.3
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.2e-54 216.5 149 71.1
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 1.4e-50 205.3 190 55.8
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 5.1e-48 196.8 155 61.9
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 2.3e-40 171.4 122 63.1
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 2.1e-38 164.9 320 33.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 1.4e-34 152.1 678 28.5
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 3.3e-31 141.0 175 47.4
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 3.5e-17 94.4 128 46.9
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.8e-16 92.0 55 83.6
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.0e-16 91.3 94 53.2
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 8.7e-16 89.7 154 40.3
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 7.4e-15 86.7 63 65.1
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 2.8e-14 84.7 120 47.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.7e-14 84.3 55 69.1
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.4e-13 81.6 55 70.9
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 2.4e-13 81.6 63 61.9
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 2.0e-12 78.6 120 45.8
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 7.6e-12 76.6 99 44.4
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 3.3e-07 61.2 105 36.2


User provided reference genes

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