Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G198300 Prunus persica HOM05D000840 ORTHO05D000670 4.6e-49 197.6 100 100.0
FvH4_3g42330 Fragaria vesca HOM05D000840 ORTHO05D000670 5.5e-10 67.8 75 53.3
MD03G1031700 Malus domestica HOM05D000840 ORTHO05D000670 1.0e-08 63.5 76 47.4
MD03G1031600 Malus domestica HOM05D000840 ORTHO05D000670 2.3e-08 62.4 75 48.0
FAN11G3785 Fragaria x ananassa HOM05D000840 ORTHO05D000670 5.1e-08 61.2 75 48.0
FvH4_3g42370 Fragaria vesca HOM05D000840 ORTHO05D000670 6.7e-08 60.8 68 50.0
FAN11G2882 Fragaria x ananassa HOM05D000840 ORTHO05D000670 6.7e-08 60.8 68 50.0
FAN25G1451 Fragaria x ananassa HOM05D000840 ORTHO05D000670 6.7e-08 60.8 68 50.0
RcHm_v2.0_Chr5g0075731 Rosa chinensis HOM05D000840 ORTHO05D000670 6.7e-08 60.8 75 48.0
Duzib018G0003 Durio zibethinus HOM05D000840 ORTHO05D000670 8.7e-08 60.5 73 46.6
Ah.12g064530 Amaranthus hybridus HOM05D000840 ORTHO05D000670 1.1e-07 60.1 77 44.2
AUR62032561 Chenopodium quinoa HOM05D000840 ORTHO05D000670 1.5e-07 59.7 68 50.0
FAN16G1995 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.5e-07 59.7 68 50.0
Ah.10g029760 Amaranthus hybridus HOM05D000840 ORTHO05D000670 1.9e-07 59.3 86 41.9
RcHm_v2.0_Chr5g0075871 Rosa chinensis HOM05D000840 ORTHO05D000670 1.9e-07 59.3 68 48.5
Gorai.009G126200 Gossypium raimondii HOM05D000840 ORTHO05D000670 2.5e-07 58.9 59 52.5
AUR62031678 Chenopodium quinoa HOM05D000840 ORTHO05D000670 3.3e-07 58.5 68 48.5
MD03G1033800 Malus domestica HOM05D000840 ORTHO05D000670 3.3e-07 58.5 68 50.0
RcHm_v2.0_Chr5g0075711 Rosa chinensis HOM05D000840 ORTHO05D000670 3.3e-07 58.5 75 45.3
MD03G1032700 Malus domestica HOM05D000840 ORTHO05D000670 4.3e-07 58.2 59 50.8
DCAR_003830 Daucus carota HOM05D000840 ORTHO05D000670 5.7e-07 57.8 57 52.6
Duzib160G0548 Durio zibethinus HOM05D000840 ORTHO05D000670 5.7e-07 57.8 59 50.8
ECA240G2103 Erigeron canadensis HOM05D000840 ORTHO05D000670 5.7e-07 57.8 59 50.8
HanXRQChr03g0080491 Helianthus annuus HOM05D000840 ORTHO05D000670 5.7e-07 57.8 59 50.8
HanXRQChr13g0410001 Helianthus annuus HOM05D000840 ORTHO05D000670 5.7e-07 57.8 59 50.8
Lsat_1_v5_gn_5_51740 Lactuca sativa HOM05D000840 ORTHO05D000670 5.7e-07 57.8 59 50.8
CSS0022831 Camellia sinensis var. sinensis HOM05D000840 ORTHO05D000670 7.4e-07 57.4 69 46.4
ClCG09G013490 Citrullus lanatus HOM05D000840 ORTHO05D000670 7.4e-07 57.4 68 47.1
COL.COLO4_11847 Corchorus olitorius HOM05D000840 ORTHO05D000670 7.4e-07 57.4 77 46.8
Gohir.A05G121700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 7.4e-07 57.4 59 50.8
Gohir.A10G072400 Gossypium hirsutum HOM05D000840 ORTHO05D000670 7.4e-07 57.4 59 49.2
Gohir.D05G122700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 7.4e-07 57.4 59 50.8
Lsat_1_v5_gn_5_51660 Lactuca sativa HOM05D000840 ORTHO05D000670 7.4e-07 57.4 56 53.6
RcHm_v2.0_Chr5g0075781 Rosa chinensis HOM05D000840 ORTHO05D000670 7.4e-07 57.4 72 45.8
RcHm_v2.0_Chr5g0075821 Rosa chinensis HOM05D000840 ORTHO05D000670 7.4e-07 57.4 59 49.2
Ciclev10024717m.g Citrus clementina HOM05D000840 ORTHO05D000670 9.6e-07 57.0 75 46.7
Duzib235G0353 Durio zibethinus HOM05D000840 ORTHO05D000670 9.6e-07 57.0 59 50.8
Gohir.D10G078800 Gossypium hirsutum HOM05D000840 ORTHO05D000670 9.6e-07 57.0 59 49.2
Gorai.011G085600 Gossypium raimondii HOM05D000840 ORTHO05D000670 9.6e-07 57.0 59 49.2
EL10Ac2g02702 Beta vulgaris HOM05D000840 ORTHO05D000670 1.3e-06 56.6 68 45.6
FAN28G2929 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.3e-06 56.6 75 48.0
MD03G1032800 Malus domestica HOM05D000840 ORTHO05D000670 1.3e-06 56.6 67 47.8
MD03G1033600 Malus domestica HOM05D000840 ORTHO05D000670 1.3e-06 56.6 67 47.8
Manes.04G107400 Manihot esculenta HOM05D000840 ORTHO05D000670 1.3e-06 56.6 87 40.2
Manes.11G061900 Manihot esculenta HOM05D000840 ORTHO05D000670 1.3e-06 56.6 75 46.7
Oeu027053.1 Olea europaea HOM05D000840 ORTHO05D000670 1.3e-06 56.6 74 47.3
Prupe.6G027500 Prunus persica HOM05D000840 ORTHO05D000670 1.3e-06 56.6 59 49.2
Prupe.6G111000 Prunus persica HOM05D000840 ORTHO05D000670 1.3e-06 56.6 59 49.2
Actinidia01521 Actinidia chinensis HOM05D000840 ORTHO05D000670 1.6e-06 56.2 68 47.1
Actinidia01692 Actinidia chinensis HOM05D000840 ORTHO05D000670 1.6e-06 56.2 68 47.1
AUR62032562 Chenopodium quinoa HOM05D000840 ORTHO05D000670 1.6e-06 56.2 75 44.0
Dinv31992 Davidia involucrata HOM05D000840 ORTHO05D000670 1.6e-06 56.2 59 49.2
FvH4_3g12350 Fragaria vesca HOM05D000840 ORTHO05D000670 1.6e-06 56.2 59 50.8
FAN16G3358 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.6e-06 56.2 59 50.8
FAN21G2894 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.6e-06 56.2 59 49.2
Potri.001G204900 Populus trichocarpa HOM05D000840 ORTHO05D000670 1.6e-06 56.2 59 49.2
Thecc.06G034100 Theobroma cacao HOM05D000840 ORTHO05D000670 1.6e-06 56.2 59 49.2
HPP92_017080 Vanilla planifolia HOM05D000840 ORTHO05D000670 1.6e-06 56.2 67 43.3
GSVIVG01012469001 Vitis vinifera HOM05D000840 ORTHO05D000670 1.6e-06 56.2 68 48.5
Cpa.g.sc10.131 Carica papaya HOM05D000840 ORTHO05D000670 2.1e-06 55.8 72 41.7
Ciclev10026665m.g Citrus clementina HOM05D000840 ORTHO05D000670 2.1e-06 55.8 59 50.8
Duzib235G0104 Durio zibethinus HOM05D000840 ORTHO05D000670 2.1e-06 55.8 59 49.2
FvH4_3g42320 Fragaria vesca HOM05D000840 ORTHO05D000670 2.1e-06 55.8 75 48.0
SalBow8G1535 Salvia bowleyana HOM05D000840 ORTHO05D000670 2.1e-06 55.8 74 45.9
Sc14g0004830 Simmondsia chinensis HOM05D000840 ORTHO05D000670 2.1e-06 55.8 68 48.5
TWI75G0929 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 2.1e-06 55.8 68 45.6
Aqoxy1G00094 Aquilegia oxysepala HOM05D000840 ORTHO05D000670 2.8e-06 55.5 81 40.7
ClCG09G013500 Citrullus lanatus HOM05D000840 ORTHO05D000670 2.8e-06 55.5 68 45.6
MD03G1033200 Malus domestica HOM05D000840 ORTHO05D000670 2.8e-06 55.5 66 48.5
Medtr4g009630 Medicago truncatula HOM05D000563 ORTHO05D000536 2.8e-06 55.5 68 48.5
Sabra03G0015900 Salix brachista HOM05D000840 ORTHO05D000670 2.8e-06 55.5 59 47.5
Sabra03G0016100 Salix brachista HOM05D000840 ORTHO05D000670 2.8e-06 55.5 59 47.5
SGA_v2.0_scaffold172G38982 Striga asiatica HOM05D000840 ORTHO05D000670 2.8e-06 55.5 59 47.5
vmacro12684 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 2.8e-06 55.5 68 47.1
BcaB03g14521 Brassica carinata HOM05D000840 ORTHO05D000670 3.7e-06 55.1 57 47.4
Cc00_g11640 Coffea canephora HOM05D000840 ORTHO05D000670 3.7e-06 55.1 59 47.5
MELO3C018679.2 Cucumis melo HOM05D000840 ORTHO05D000670 3.7e-06 55.1 68 45.6
Migut.B01095 Erythranthe guttata HOM05D000840 ORTHO05D000670 3.7e-06 55.1 59 47.5
Gohir.A10G072300 Gossypium hirsutum HOM05D000840 ORTHO05D000670 3.7e-06 55.1 58 48.3
MD11G1036600 Malus domestica HOM05D000840 ORTHO05D000670 3.7e-06 55.1 59 49.2
Potri.003G025200 Populus trichocarpa HOM05D000840 ORTHO05D000670 3.7e-06 55.1 60 48.3
Sed0011014 Sechium edule HOM05D000840 ORTHO05D000670 3.7e-06 55.1 69 44.9
TAR633G2216 Trochodendron aralioides HOM05D000840 ORTHO05D000670 3.7e-06 55.1 69 43.5
unitig_46.g18378 Utricularia gibba HOM05D000840 ORTHO05D000670 3.7e-06 55.1 65 43.1
unitig_48.g30293 Utricularia gibba HOM05D000840 ORTHO05D000670 3.7e-06 55.1 65 43.1
vmacro04228 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 3.7e-06 55.1 59 45.8
CSS0002332 Camellia sinensis var. sinensis HOM05D000840 ORTHO05D000670 4.8e-06 54.7 59 49.2
CANSAT56G3623 Cannabis sativa HOM05D000840 ORTHO05D000670 4.8e-06 54.7 67 44.8
Cc02_g33070 Coffea canephora HOM05D000840 ORTHO05D000670 4.8e-06 54.7 59 47.5
Dinv31990 Davidia involucrata HOM05D000840 ORTHO05D000670 4.8e-06 54.7 56 51.8
Gohir.D10G078700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 4.8e-06 54.7 59 47.5
Medtr2g095920 Medicago truncatula HOM05D000134 ORTHO05D000168 4.8e-06 54.7 58 51.7
Nn2g14599 Nelumbo nucifera HOM05D000840 ORTHO05D000670 4.8e-06 54.7 69 46.4
RcHm_v2.0_Chr5g0075861 Rosa chinensis HOM05D000840 ORTHO05D000670 4.8e-06 54.7 59 49.2
TPR.G38700 Trifolium pratense HOM05D000840 ORTHO05D000670 4.8e-06 54.7 59 49.2
TWI12G0605 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 4.8e-06 54.7 72 47.2
CsaV3_7G006140 Cucumis sativus L. HOM05D000840 ORTHO05D000670 6.2e-06 54.3 68 45.6
ECA240G0511 Erigeron canadensis HOM05D000840 ORTHO05D000670 6.2e-06 54.3 59 49.2
HanXRQChr03g0079721 Helianthus annuus HOM05D000840 ORTHO05D000670 6.2e-06 54.3 59 45.8
Os08g0564800 Oryza sativa ssp. japonica HOM05D000840 ORTHO05D000670 6.2e-06 54.3 77 44.2
Duzib235G1450 Durio zibethinus HOM05D000840 ORTHO05D000670 8.2e-06 53.9 59 47.5
Oeu027052.1 Olea europaea HOM05D000840 ORTHO05D000670 8.2e-06 53.9 59 47.5
Potri.003G012400 Populus trichocarpa HOM05D000840 ORTHO05D000670 8.2e-06 53.9 59 45.8
Potri.003G028089 Populus trichocarpa HOM05D000840 ORTHO05D000670 8.2e-06 53.9 59 45.8


User provided reference genes

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