Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 2.4e-119 432.2 219 100.0
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 5.1e-69 265.0 219 68.9
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 1.0e-64 250.8 220 64.5
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 2.7e-62 242.7 219 64.8
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 4.6e-62 241.9 219 64.8
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 4.6e-62 241.9 218 66.5
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 8.7e-61 237.7 219 63.5
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.1e-60 237.3 219 63.0
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 2.0e-57 226.5 217 59.9
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 7.6e-57 224.6 211 63.0
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 2.2e-56 223.0 217 59.4
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 2.3e-53 213.0 213 57.7
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 2.3e-53 213.0 213 57.7
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 3.9e-53 212.2 222 58.1
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 8.7e-53 211.1 219 58.0
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 1.1e-50 204.1 212 58.5
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 6.5e-48 194.9 220 55.0
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 1.0e-45 187.6 206 55.8
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 1.0e-45 187.6 217 53.0
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 3.0e-45 186.0 219 54.3
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 6.7e-45 184.9 216 52.3
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 1.1e-44 184.1 218 50.9
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 8.2e-43 177.9 204 53.9
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 1.4e-42 177.2 220 52.3
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 3.1e-42 176.0 219 52.1
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 4.5e-41 172.2 218 48.6
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 3.6e-38 162.5 219 50.7
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 7.9e-38 161.4 218 48.6
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 1.0e-37 161.0 219 50.7
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 5.2e-37 158.7 207 51.7
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 1.0e-32 144.4 198 47.5
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 2.9e-32 142.9 211 45.0
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 6.5e-32 141.7 217 41.9
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 2.5e-31 139.8 219 46.1
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 4.2e-31 139.0 189 47.1
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 9.4e-31 137.9 221 41.6
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 1.0e-29 134.4 187 47.6
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 1.0e-29 134.4 220 45.5
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 1.0e-29 134.4 217 39.2
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 1.4e-29 134.0 179 48.0
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 1.4e-29 134.0 190 46.3
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 4.0e-29 132.5 212 41.5
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 5.2e-29 132.1 187 49.2
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 6.7e-29 131.7 184 44.6
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 1.2e-28 131.0 184 45.1
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 1.5e-28 130.6 188 47.9
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 1.5e-28 130.6 188 47.9
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 1.5e-28 130.6 198 44.9
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 2.0e-28 130.2 191 46.6
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 2.2e-27 126.7 214 39.3
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 6.3e-27 125.2 187 49.7
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 8.2e-27 124.8 190 48.4
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 8.2e-27 124.8 190 46.3
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 1.6e-25 120.6 217 40.1
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 1.0e-24 117.9 187 46.0
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 2.2e-24 116.7 146 51.4
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 2.9e-24 116.3 157 49.0
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 2.7e-22 109.8 197 41.6
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 2.7e-22 109.8 121 52.9
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 6.1e-22 108.6 213 36.6
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 2.3e-21 106.7 213 35.7
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 4.0e-21 105.9 214 36.9
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 2.0e-20 103.6 214 38.8
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 1.3e-19 100.9 133 47.4
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 6.3e-19 98.6 218 35.3
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 1.4e-18 97.4 218 35.3
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 5.4e-18 95.5 179 36.3
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 7.0e-18 95.1 124 48.4
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 5.5e-15 85.5 174 36.8
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 1.0e-13 81.3 141 40.4
HPP92_002319 Vanilla planifolia HOM05D007989 ORTHO05D010087 1.8e-13 80.5 182 33.0
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 1.5e-12 77.4 218 32.6
Sed0027218 Sechium edule HOM05D007989 ORTHO05D010087 2.0e-12 77.0 62 67.7
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 2.6e-12 76.6 189 34.4
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 9.8e-12 74.7 153 41.8
Zm00001eb033460 Zea mays HOM05D007989 ORTHO05D010087 1.3e-11 74.3 184 35.9
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 2.2e-11 73.6 189 32.8
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 2.2e-11 73.6 220 30.5
Carub.0001s0097 Capsella rubella HOM05D002476 ORTHO05D002652 2.2e-11 73.6 200 32.0
Os08g0483100 Oryza sativa ssp. japonica HOM05D007989 ORTHO05D010087 2.2e-11 73.6 183 33.3
THA.LOC104825884 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 2.2e-11 73.6 215 32.6
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 4.9e-11 72.4 215 31.2
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 1.1e-10 71.2 189 32.8
C05p00710 Brassica napus HOM05D002476 ORTHO05D002652 1.8e-10 70.5 191 33.5
A10p00670 Brassica napus HOM05D002476 ORTHO05D002652 2.4e-10 70.1 191 30.9
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 7.0e-10 68.6 192 32.3
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 9.2e-10 68.2 185 30.8
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 1.2e-09 67.8 194 32.0
CDE10G0158 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.2e-09 67.8 235 28.5
MD07G1152400 Malus domestica HOM05D002476 ORTHO05D002652 1.2e-09 67.8 229 29.3
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 2.0e-09 67.0 118 41.5
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 2.0e-09 67.0 192 31.2
PGR031G2287 Punica granatum HOM05D002476 ORTHO05D002652 2.0e-09 67.0 247 28.7
BraA10t42344Z Brassica rapa HOM05D002476 ORTHO05D002652 2.7e-09 66.6 186 33.3
Thhalv10001490m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 2.7e-09 66.6 118 39.8
FAN03G2932 Fragaria x ananassa HOM05D002476 ORTHO05D002652 3.5e-09 66.2 235 31.1
FAN10G1192 Fragaria x ananassa HOM05D002476 ORTHO05D002652 3.5e-09 66.2 235 30.2
MD01G1083700 Malus domestica HOM05D002476 ORTHO05D002652 3.5e-09 66.2 228 29.8
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 4.5e-09 65.9 197 33.0
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 7.8e-09 65.1 197 33.0
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 1.0e-08 64.7 189 31.2
Thhalv10008123m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 1.0e-08 64.7 194 30.9
Ca_12783_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.3e-08 64.3 207 31.9
Ca_12787_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.3e-08 64.3 207 31.9
Ca_29819_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.3e-08 64.3 207 31.9
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 1.3e-08 64.3 190 32.1
FAN01G1628 Fragaria x ananassa HOM05D002476 ORTHO05D002652 1.7e-08 63.9 238 29.0
PSO063G3833 Papaver somniferum HOM05D002476 ORTHO05D002652 1.7e-08 63.9 240 30.0
THA.LOC104817374 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 1.7e-08 63.9 246 28.9
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 2.3e-08 63.5 178 34.8
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 2.3e-08 63.5 131 38.9
FvH4_7g16870 Fragaria vesca HOM05D002476 ORTHO05D002652 2.3e-08 63.5 236 29.2
FAN06G0225 Fragaria x ananassa HOM05D002476 ORTHO05D002652 2.3e-08 63.5 236 29.2
FAN10G2775 Fragaria x ananassa HOM05D002476 ORTHO05D002652 2.3e-08 63.5 236 28.4
PSO170G6198 Papaver somniferum HOM05D002476 ORTHO05D002652 2.3e-08 63.5 240 29.6
VMungo0331G0327 Vigna mungo HOM05D002476 ORTHO05D002652 3.8e-08 62.8 236 29.2
CSS0042345 Camellia sinensis var. sinensis HOM05D002476 ORTHO05D002652 5.0e-08 62.4 228 30.7
C04p72220 Brassica napus HOM05D002476 ORTHO05D002652 6.6e-08 62.0 180 32.2
CANSAT56G3996 Cannabis sativa HOM05D002476 ORTHO05D002652 8.6e-08 61.6 170 32.9
Duzib138G1935 Durio zibethinus HOM05D002476 ORTHO05D002652 8.6e-08 61.6 236 29.2
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 1.1e-07 61.2 181 29.3
BolC4t28710H Brassica oleracea HOM05D002476 ORTHO05D002652 1.5e-07 60.8 124 37.1
FAN06G4279 Fragaria x ananassa HOM05D002476 ORTHO05D002652 1.5e-07 60.8 235 31.5
Lj1g0006160 Lotus japonicus HOM05D002476 ORTHO05D002652 1.5e-07 60.8 223 30.9
arahy.Tifrunner.gnm1.ann1.0E4TYB Arachis hypogaea HOM05D002476 ORTHO05D002652 2.5e-07 60.1 246 28.5
Gohir.D07G142033 Gossypium hirsutum HOM05D002476 ORTHO05D002652 3.3e-07 59.7 226 27.0
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 4.3e-07 59.3 196 31.1
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 4.3e-07 59.3 193 32.1
CiPaw.02G041500 Carya illinoinensis HOM05D002476 ORTHO05D002652 4.3e-07 59.3 241 29.5
Gohir.A07G136700 Gossypium hirsutum HOM05D002476 ORTHO05D002652 5.6e-07 58.9 228 28.1
Gorai.001G153700 Gossypium raimondii HOM05D002476 ORTHO05D002652 5.6e-07 58.9 225 28.0
Manes.01G244700 Manihot esculenta HOM05D002476 ORTHO05D002652 5.6e-07 58.9 219 29.2
SGA_v2.0_scaffold22G09959 Striga asiatica HOM05D002476 ORTHO05D002652 5.6e-07 58.9 212 30.2
unitig_8.g4994 Utricularia gibba HOM05D000331 ORTHO05D005958 5.6e-07 58.9 132 33.3
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 7.3e-07 58.5 193 31.6
BolC4t21790H Brassica oleracea HOM05D002476 ORTHO05D002652 7.3e-07 58.5 193 31.6
Peaxi162Scf00345g00121 Petunia axillaris HOM05D002476 ORTHO05D002652 7.3e-07 58.5 155 29.7
COL.COLO4_06227 Corchorus olitorius HOM05D002476 ORTHO05D002652 9.5e-07 58.2 225 28.0
Gohir.D11G102700 Gossypium hirsutum HOM05D002476 ORTHO05D002652 1.2e-06 57.8 124 37.1
Potri.002G173200 Populus trichocarpa HOM05D002476 ORTHO05D002652 1.2e-06 57.8 251 28.3
Rhsim07G0003100 Rhododendron simsii HOM05D002476 ORTHO05D002652 1.2e-06 57.8 179 29.6
CANSAT21G0730 Cannabis sativa HOM05D002476 ORTHO05D002652 1.6e-06 57.4 225 32.0
ECA234G4012 Erigeron canadensis HOM05D002476 ORTHO05D002652 1.6e-06 57.4 114 37.7
Nitab4.5_0016714g0010 Nicotiana tabacum HOM05D002476 ORTHO05D002652 1.6e-06 57.4 151 29.8
PSO135G0353 Papaver somniferum HOM05D002476 ORTHO05D002652 1.6e-06 57.4 207 29.5
Psat4g214720 Pisum sativum HOM05D002476 ORTHO05D002652 1.6e-06 57.4 207 28.0
Sabra14G0073700 Salix brachista HOM05D002476 ORTHO05D002652 1.6e-06 57.4 241 28.6
VMungo1309G1756 Vigna mungo HOM05D002476 ORTHO05D002652 1.6e-06 57.4 228 29.8
arahy.Tifrunner.gnm1.ann1.JA8H3U Arachis hypogaea HOM05D002476 ORTHO05D002652 2.1e-06 57.0 172 32.6
Migut.N01533 Erythranthe guttata HOM05D002476 ORTHO05D002652 2.1e-06 57.0 214 27.6
PSO384G4994 Papaver somniferum HOM05D002476 ORTHO05D002652 2.1e-06 57.0 206 31.1
THA.LOC104802082 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 2.1e-06 57.0 124 34.7
arahy.Tifrunner.gnm1.ann1.9N50L0 Arachis hypogaea HOM05D002476 ORTHO05D002652 2.8e-06 56.6 185 29.7
Gorai.007G109800 Gossypium raimondii HOM05D002476 ORTHO05D002652 2.8e-06 56.6 124 36.3
Lj1g0018688 Lotus japonicus HOM05D002476 ORTHO05D002652 2.8e-06 56.6 245 29.0
SGA_v2.0_scaffold43G16346 Striga asiatica HOM05D002476 ORTHO05D002652 2.8e-06 56.6 139 30.2
TPR.G18768 Trifolium pratense HOM05D002476 ORTHO05D002652 2.8e-06 56.6 222 29.3
Glyma.03G258600 Glycine max HOM05D002476 ORTHO05D002652 3.6e-06 56.2 175 30.3
Glyma.19G257200 Glycine max HOM05D002476 ORTHO05D002652 3.6e-06 56.2 175 29.1
Gohir.A11G098000 Gossypium hirsutum HOM05D002476 ORTHO05D002652 3.6e-06 56.2 124 37.1
Lj9A600T51 Lonicera japonica HOM05D002476 ORTHO05D002652 3.6e-06 56.2 61 49.2
MD01G1222700 Malus domestica HOM05D002476 ORTHO05D002652 3.6e-06 56.2 212 28.8
Oeu004960.1 Olea europaea HOM05D002476 ORTHO05D002652 3.6e-06 56.2 119 37.8
Psat3g001840 Pisum sativum HOM05D002476 ORTHO05D002652 3.6e-06 56.2 228 29.4
Solyc01g096100.2 Solanum lycopersicum HOM05D002476 ORTHO05D002652 3.6e-06 56.2 227 28.2
BraA04t18904Z Brassica rapa HOM05D002476 ORTHO05D002652 4.7e-06 55.8 180 33.9
ClCG01G000370 Citrullus lanatus HOM05D002476 ORTHO05D002652 4.7e-06 55.8 181 29.3
Ciclev10019982m.g Citrus clementina HOM05D002476 ORTHO05D002652 4.7e-06 55.8 134 33.6
MELO3C005891.2 Cucumis melo HOM05D002476 ORTHO05D002652 4.7e-06 55.8 180 30.0
SEGI_03484 Sequoiadendron giganteum HOM05D002476 ORTHO05D002652 4.7e-06 55.8 142 31.7
SEGI_39687 Sequoiadendron giganteum HOM05D002476 ORTHO05D002652 4.7e-06 55.8 142 35.9
TPR.G24528 Trifolium pratense HOM05D002476 ORTHO05D002652 4.7e-06 55.8 210 27.6
ATR0758G001 Amborella trichopoda HOM05D002476 ORTHO05D010087 6.1e-06 55.5 121 35.5
arahy.Tifrunner.gnm1.ann1.2ZXA1E Arachis hypogaea HOM05D002476 ORTHO05D002652 6.1e-06 55.5 189 30.2
arahy.Tifrunner.gnm1.ann1.JF2XAQ Arachis hypogaea HOM05D002476 ORTHO05D002652 6.1e-06 55.5 86 43.0
arahy.Tifrunner.gnm1.ann1.SBQR86 Arachis hypogaea HOM05D002476 ORTHO05D002652 6.1e-06 55.5 86 43.0
A04p34460 Brassica napus HOM05D002476 ORTHO05D002652 6.1e-06 55.5 178 30.3
Phvul.009G051400 Phaseolus vulgaris HOM05D002476 ORTHO05D002652 6.1e-06 55.5 221 31.7
PGSC0003DMG400000234 Solanum tuberosum HOM05D002476 ORTHO05D002652 6.1e-06 55.5 155 31.0
CsaV3_5G000450 Cucumis sativus L. HOM05D002476 ORTHO05D002652 8.0e-06 55.1 175 30.9
Eucgr.E00042 Eucalyptus grandis HOM05D002476 ORTHO05D002652 8.0e-06 55.1 61 49.2
MBI07_g24772_MAGBIO Magnolia biondii HOM05D002476 ORTHO05D002652 8.0e-06 55.1 127 33.9
Oeu043222.3 Olea europaea HOM05D002476 ORTHO05D002652 8.0e-06 55.1 163 30.1
Sed0024917 Sechium edule HOM05D002476 ORTHO05D002652 8.0e-06 55.1 218 28.0
Sopen01g039820 Solanum pennellii HOM05D002476 ORTHO05D002652 8.0e-06 55.1 227 27.3


User provided reference genes

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