Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.5e-195 686.0 355 100.0
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 5.6e-158 561.2 354 83.1
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.4e-145 520.0 360 76.7
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 9.3e-137 490.7 356 73.6
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 2.7e-136 489.2 355 73.5
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 8.4e-122 441.0 361 67.0
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 1.4e-121 440.3 360 68.1
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 1.1e-118 430.6 349 67.0
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 3.7e-117 425.6 329 69.6
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 3.7e-117 425.6 329 69.6
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.1e-116 424.1 361 63.7
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.5e-114 414.8 353 64.3
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.5e-114 414.8 353 64.3
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.5e-114 414.8 353 64.3
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.5e-114 414.8 353 64.3
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 5.5e-113 411.8 348 63.5
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.2e-112 410.6 353 64.0
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 6.1e-112 408.3 342 63.7
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 1.0e-111 407.5 328 66.5
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 2.3e-111 406.4 354 61.9
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 3.0e-111 406.0 337 65.0
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 3.9e-111 405.6 340 63.2
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 8.7e-111 404.4 354 63.6
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 8.7e-111 404.4 386 59.1
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.5e-110 403.7 357 63.0
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.3e-110 402.5 341 64.8
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.3e-109 400.6 326 66.9
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 2.2e-109 399.8 354 61.9
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 2.8e-109 399.4 338 63.6
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 8.2e-109 397.9 343 63.3
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 1.1e-108 397.5 347 61.4
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 1.8e-108 396.7 356 61.2
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 4.1e-108 395.6 355 58.3
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 1.2e-107 394.0 358 60.1
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 3.4e-107 392.5 344 63.4
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.9e-106 389.4 351 62.1
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 3.8e-106 389.0 351 62.1
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 5.0e-106 388.7 331 63.1
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 1.1e-105 387.5 335 60.0
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 3.2e-105 386.0 338 61.8
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 7.2e-105 384.8 341 58.9
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.2e-104 384.0 351 60.4
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.6e-104 383.6 350 59.1
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 3.6e-104 382.5 353 59.2
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.4e-103 380.6 353 60.3
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 5.1e-103 378.6 349 60.2
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 8.8e-103 377.9 354 59.0
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 2.5e-102 376.3 352 57.7
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 4.3e-102 375.6 331 60.4
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 4.3e-102 375.6 353 56.4
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 7.4e-102 374.8 356 55.9
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.3e-101 374.0 352 57.1
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 1.7e-101 373.6 362 55.8
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 1.7e-101 373.6 340 59.7
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 2.2e-101 373.2 350 57.7
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 2.8e-101 372.9 345 58.8
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 3.7e-101 372.5 340 59.4
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 4.8e-101 372.1 352 56.5
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.1e-100 370.9 340 59.4
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.8e-100 370.2 356 58.1
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 2.4e-100 369.8 354 56.2
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 3.1e-100 369.4 343 58.9
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 6.9e-100 368.2 348 55.2
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 7.7e-99 364.8 338 59.8
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.0e-98 364.4 340 59.4
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 2.2e-98 363.2 310 61.9
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.2e-98 363.2 342 57.9
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 1.9e-97 360.1 355 57.2
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 4.7e-96 355.5 355 52.1
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 7.9e-96 354.8 365 55.9
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 3.0e-95 352.8 334 58.1
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 3.0e-95 352.8 343 56.6
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 3.9e-95 352.4 362 55.0
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 6.7e-95 351.7 352 56.5
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 1.5e-94 350.5 353 54.1
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.5e-94 350.5 357 55.2
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 5.7e-94 348.6 391 51.7
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 1.3e-93 347.4 354 54.2
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.8e-93 346.3 337 56.4
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 2.8e-93 346.3 374 52.9
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 8.2e-93 344.7 337 58.8
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 1.1e-92 344.4 341 52.2
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 1.2e-91 340.9 352 54.3
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 1.5e-91 340.5 352 54.3
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 2.6e-91 339.7 340 55.3
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 5.9e-91 338.6 339 55.5
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 2.2e-90 336.7 355 53.5
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.1e-89 334.3 352 54.0
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.0e-87 327.8 356 52.5
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.0e-87 327.8 396 49.2
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.0e-87 327.8 396 49.2
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 1.7e-85 320.5 340 53.2
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 8.2e-85 318.2 324 52.8
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 2.0e-83 313.5 335 54.3
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.1e-81 307.8 350 48.3
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.3e-77 294.3 360 48.6
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.9e-73 280.4 204 65.7
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 4.7e-72 275.8 335 46.9
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 6.1e-72 275.4 304 52.3
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 2.8e-69 266.5 334 45.5
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.8e-69 265.8 195 67.7
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 2.5e-65 253.4 134 87.3
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 3.3e-65 253.1 168 68.5
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 5.2e-63 245.7 351 44.7
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 8.9e-63 245.0 345 42.9
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 4.4e-62 242.7 334 39.8
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 5.7e-62 242.3 328 42.7
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 9.8e-62 241.5 345 42.9
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 1.1e-57 228.0 130 80.8
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 9.5e-57 224.9 247 54.7
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 8.0e-56 221.9 379 38.8
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.1e-52 211.5 202 52.5
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 5.6e-49 199.1 346 39.3
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 7.3e-49 198.7 314 43.3
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.7e-42 177.6 314 40.8
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 1.9e-41 174.1 363 33.9
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 6.8e-39 165.6 332 33.7
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 2.6e-38 163.7 325 38.2
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 2.6e-38 163.7 204 48.0
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.9e-36 157.5 260 43.1
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 3.6e-32 143.3 142 62.0
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 3.8e-29 133.3 167 53.3
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 2.4e-28 130.6 143 44.8
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 3.0e-26 123.6 86 67.4
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 7.6e-22 109.0 77 66.2
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 2.2e-21 107.5 71 67.6
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.7e-18 97.8 90 57.8
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 8.7e-18 95.5 139 46.0
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 9.6e-17 92.0 82 53.7
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 3.1e-15 87.0 132 33.3
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 3.5e-11 73.6 157 38.9
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 1.3e-10 71.6 99 41.4
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 3.7e-08 63.5 110 31.8
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 4.8e-08 63.2 58 55.2


User provided reference genes

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