Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.2e-88 328.9 166 100.0
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 6.6e-69 264.2 173 80.3
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.3e-66 255.8 173 76.3
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.1e-63 246.9 169 75.1
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.2e-62 243.4 169 75.7
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.6e-62 243.0 168 75.6
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.7e-62 242.3 169 75.1
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.3e-61 240.0 168 74.4
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 6.6e-61 237.7 167 72.5
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 8.6e-61 237.3 170 71.8
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 9.6e-60 233.8 179 67.6
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 9.6e-60 233.8 169 71.6
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.2e-59 233.4 174 68.4
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 6.2e-59 231.1 173 69.9
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 2.4e-58 229.2 174 67.2
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 4.0e-58 228.4 185 65.4
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 4.0e-58 228.4 163 71.2
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.2e-58 228.0 166 69.9
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.0e-57 226.1 173 67.6
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.0e-57 226.1 173 67.6
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.4e-57 225.3 177 67.2
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 4.4e-57 224.9 164 69.5
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.9e-56 222.2 170 70.6
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.9e-56 222.2 165 70.3
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 4.9e-56 221.5 169 68.6
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 6.4e-56 221.1 177 65.5
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.4e-55 219.2 173 65.9
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.4e-55 219.2 166 66.9
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 5.4e-55 218.0 167 67.1
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 5.4e-55 218.0 166 68.1
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.1e-54 216.1 171 67.3
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.7e-54 215.7 171 66.7
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.7e-54 215.7 173 65.3
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.7e-54 215.7 166 66.3
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 2.7e-54 215.7 172 65.7
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.5e-54 215.3 177 65.5
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.6e-54 214.9 179 63.7
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 4.6e-54 214.9 200 59.5
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 6.0e-54 214.5 167 65.3
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.0e-54 214.5 179 63.7
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 6.0e-54 214.5 178 63.5
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 7.8e-54 214.2 188 61.2
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 7.8e-54 214.2 175 66.3
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.0e-53 213.8 177 65.0
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.0e-53 213.8 167 65.9
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.3e-53 213.4 167 67.1
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.3e-53 213.4 183 61.7
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.3e-53 213.4 183 61.7
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.3e-53 213.4 169 66.9
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 2.3e-53 212.6 182 62.6
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.3e-53 212.6 178 62.4
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.9e-53 211.8 168 69.6
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 3.9e-53 211.8 173 65.3
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 5.1e-53 211.5 132 80.3
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 8.7e-53 210.7 174 63.2
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.9e-52 209.5 177 65.5
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.9e-52 209.5 169 64.5
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.9e-52 209.5 151 68.9
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.5e-52 209.1 184 60.3
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 5.6e-52 208.0 184 60.3
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 7.3e-52 207.6 175 62.9
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 7.3e-52 207.6 175 62.9
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 9.6e-52 207.2 181 63.0
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.3e-51 206.8 167 65.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.3e-51 206.8 167 65.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 2.1e-51 206.1 189 59.3
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 2.1e-51 206.1 189 59.8
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.1e-51 206.1 167 65.9
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 3.6e-51 205.3 179 62.0
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 3.6e-51 205.3 183 59.0
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 6.2e-51 204.5 178 61.8
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 6.2e-51 204.5 178 61.8
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 6.2e-51 204.5 173 63.6
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.1e-50 203.8 177 61.6
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.1e-50 203.8 176 60.8
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.4e-50 203.4 178 61.8
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.8e-50 203.0 177 62.1
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 2.4e-50 202.6 164 61.0
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.4e-50 202.6 177 62.1
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.4e-50 202.6 148 70.9
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 2.4e-50 202.6 176 62.5
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.4e-50 202.6 198 59.1
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 3.1e-50 202.2 177 62.7
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 9.0e-50 200.7 183 59.6
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.2e-49 200.3 168 62.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.5e-49 199.9 186 62.4
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.5e-49 199.9 162 64.8
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.0e-49 199.5 174 61.5
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.6e-49 199.1 176 60.8
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.4e-49 198.7 177 61.0
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 7.6e-49 197.6 176 60.8
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.3e-48 196.8 187 59.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.3e-48 196.8 176 60.2
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.7e-48 196.4 174 60.9
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.7e-48 196.4 163 60.1
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 4.9e-48 194.9 179 59.2
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 4.9e-48 194.9 137 71.5
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.9e-47 193.0 172 63.4
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 9.3e-47 190.7 174 58.0
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 9.3e-47 190.7 181 60.2
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 9.3e-47 190.7 174 58.0
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.1e-46 189.5 184 58.2
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.1e-46 189.5 177 59.3
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.7e-45 186.4 177 58.8
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 6.6e-45 184.5 131 69.5
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-44 183.7 169 59.2
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.9e-44 183.0 170 57.6
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.5e-44 182.6 177 59.3
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 7.3e-44 181.0 120 73.3
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 9.6e-44 180.6 128 69.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.8e-42 176.4 190 53.7
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 3.1e-42 175.6 149 61.7
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 6.9e-42 174.5 164 57.9
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.6e-38 163.3 190 48.9
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 2.7e-38 162.5 150 60.7
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.7e-38 162.5 130 61.5
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.3e-37 160.2 188 51.1
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 5.1e-37 158.3 131 62.6
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.6e-35 153.3 91 82.4
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-34 150.6 179 50.8
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.1e-31 140.6 142 55.6
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 2.5e-31 139.4 137 55.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 3.2e-31 139.0 102 66.7
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.3e-29 133.7 108 62.0
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.8e-29 133.3 117 58.1
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.1e-29 131.7 112 59.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 5.1e-29 131.7 103 64.1
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.1e-28 130.6 103 63.1
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.3e-27 127.1 107 59.8
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.1e-27 126.3 90 75.6
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 2.8e-27 125.9 102 63.7
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 4.8e-27 125.2 95 65.3
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.2e-25 120.6 102 63.7
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 2.9e-24 115.9 91 59.3
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.4e-23 113.6 100 59.0
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 9.3e-23 110.9 108 56.5
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 4.6e-22 108.6 100 58.0
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.3e-21 106.3 98 54.1
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.1e-21 105.1 115 47.8
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 8.7e-21 104.4 119 48.7
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.1e-20 104.0 108 53.7
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 8.2e-19 97.8 99 50.5
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.1e-18 95.9 96 59.4
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 5.3e-18 95.1 98 46.9
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.2e-17 94.0 73 60.3
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.0e-17 93.2 64 73.4
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.0e-16 90.9 103 47.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.0e-16 90.9 67 68.7
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.2e-16 89.7 94 52.1
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 2.2e-16 89.7 101 49.5
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 4.2e-15 85.5 92 52.2
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 3.3e-12 75.9 87 40.2


User provided reference genes

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