Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 8.7e-201 703.7 443 100.0
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.2e-134 481.1 458 71.6
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.0e-133 479.9 457 70.9
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 3.9e-132 475.7 456 75.4
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.1e-130 468.4 459 70.2
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.9e-126 456.8 463 67.4
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.6e-122 442.6 456 66.4
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 8.9e-121 438.0 464 65.1
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.2e-120 437.6 458 69.9
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.4e-120 436.0 447 60.4
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.7e-119 432.6 469 60.8
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 6.0e-117 425.2 468 61.8
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 7.8e-117 424.9 427 64.9
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 3.9e-116 422.5 484 59.1
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.3e-115 419.5 457 66.5
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 4.0e-113 412.5 471 61.8
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 5.2e-113 412.1 495 59.0
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 6.8e-113 411.8 445 58.7
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.2e-112 411.0 330 70.3
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 7.6e-112 408.3 460 58.5
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 9.9e-112 407.9 451 60.8
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.2e-111 406.8 463 62.9
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 3.7e-111 406.0 486 59.1
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.4e-110 404.1 468 58.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.9e-110 403.7 474 56.1
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.9e-110 403.7 466 59.9
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 4.1e-110 402.5 448 60.3
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.4e-110 402.1 463 62.2
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 1.6e-109 400.6 348 67.2
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.5e-109 399.4 463 61.6
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 7.8e-109 398.3 470 61.9
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.7e-108 397.1 483 58.2
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.7e-108 397.1 475 61.1
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.7e-108 397.1 456 57.2
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.3e-108 396.7 495 59.2
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 5.1e-108 395.6 384 67.4
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 5.1e-108 395.6 464 62.1
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 8.6e-108 394.8 323 70.6
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.5e-107 393.3 452 58.4
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 7.3e-107 391.7 461 61.6
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 2.1e-106 390.2 452 57.7
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 6.2e-106 388.7 251 77.3
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 6.2e-106 388.7 240 84.6
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 8.1e-106 388.3 487 58.3
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.4e-105 387.5 461 56.2
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 4.0e-105 386.0 492 54.5
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.0e-105 386.0 445 58.7
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 5.2e-105 385.6 273 72.9
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 6.8e-105 385.2 248 77.4
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 2.0e-104 383.6 462 60.4
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 2.0e-104 383.6 254 76.4
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 5.8e-104 382.1 279 70.6
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.9e-103 379.8 444 58.1
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.9e-103 379.0 444 58.3
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.4e-102 377.5 481 56.1
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.9e-102 377.1 494 55.5
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 3.2e-102 376.3 451 57.0
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 6.0e-101 372.1 495 55.4
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.0e-100 371.3 468 56.2
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.3e-100 370.9 494 54.7
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.7e-100 370.5 255 74.1
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 3.9e-100 369.4 285 70.9
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 5.1e-100 369.0 443 55.8
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 5.1e-100 369.0 471 56.7
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.5e-99 367.5 324 65.4
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 1.9e-99 367.1 249 73.9
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 1.9e-99 367.1 249 73.9
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.5e-99 366.7 484 56.4
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 3.3e-99 366.3 449 58.4
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 5.6e-99 365.5 436 56.0
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 9.6e-99 364.8 284 69.4
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.3e-98 364.4 450 57.6
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.1e-97 359.8 485 56.7
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.0e-96 357.1 522 51.5
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 2.6e-96 356.7 329 64.1
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 4.4e-96 355.9 449 57.0
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 5.8e-96 355.5 479 54.5
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 9.9e-96 354.8 467 56.3
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.7e-95 354.0 516 51.4
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.2e-95 353.6 488 56.4
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.8e-95 352.8 478 56.5
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.4e-94 350.9 454 53.3
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.9e-94 350.5 472 56.4
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.9e-94 350.5 284 66.5
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 7.1e-94 348.6 489 57.1
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 3.5e-93 346.3 465 52.5
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 4.6e-93 345.9 446 59.9
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 5.1e-92 342.4 462 57.1
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 8.7e-92 341.7 377 60.5
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.5e-91 340.9 386 55.4
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.9e-91 340.5 464 53.0
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 2.5e-91 340.1 311 63.3
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 3.3e-91 339.7 495 54.3
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 5.6e-91 339.0 264 68.2
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 7.3e-91 338.6 446 54.5
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 9.6e-91 338.2 247 69.2
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 9.6e-91 338.2 282 66.0
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 9.6e-91 338.2 254 69.7
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.6e-90 337.4 458 57.2
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 8.1e-90 335.1 329 62.6
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.8e-89 334.0 444 54.7
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 4.0e-89 332.8 460 52.0
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.9e-89 332.0 331 60.7
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.2e-88 331.3 472 50.4
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.2e-88 331.3 319 59.9
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.4e-86 323.6 498 46.0
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 2.4e-86 323.6 482 56.2
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 4.2e-86 322.8 484 53.1
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.0e-85 318.9 487 54.0
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 6.7e-84 315.5 317 55.2
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 3.3e-83 313.2 422 50.9
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.4e-81 307.8 465 52.7
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 5.3e-81 305.8 213 74.2
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 7.6e-80 302.0 464 50.6
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 2.2e-79 300.4 430 47.0
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 4.2e-78 296.2 319 52.7
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.9e-75 287.3 223 62.8
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 4.1e-65 253.1 326 47.2
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.5e-59 234.6 289 68.9
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.6e-53 214.5 289 42.6
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.2e-48 198.4 249 45.4
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 7.7e-48 195.7 248 46.0
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.3e-47 194.9 252 41.3
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.9e-46 191.0 112 83.9
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.8e-41 174.5 334 35.0
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.2e-40 171.8 246 39.8
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.0e-39 168.7 324 42.3
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 8.5e-39 165.6 237 43.0
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 7.2e-38 162.5 89 83.1
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 3.7e-34 150.2 225 37.8
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.9e-31 140.6 163 48.5
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 6.5e-31 139.4 227 39.2
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 5.5e-30 136.3 219 35.6
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 4.4e-27 126.7 215 31.6
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 2.7e-24 117.5 220 35.9
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 4.5e-24 116.7 160 42.5
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 5.0e-23 113.2 225 30.7
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 2.5e-22 110.9 279 46.6
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.6e-21 108.2 234 28.6
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.0e-15 89.0 143 50.3
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.1e-14 85.5 131 39.7
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.5e-14 85.1 243 31.7
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 5.6e-14 83.2 211 31.3
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 8.0e-13 79.3 105 45.7
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 8.0e-13 79.3 105 42.9
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 4.0e-12 77.0 108 42.6
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 5.2e-12 76.6 177 33.9
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 2.9e-10 70.9 48 54.2
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 4.1e-09 67.0 54 46.3
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.2e-08 65.5 134 32.8
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.3e-07 61.2 254 35.0
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 5.6e-06 56.6 126 27.8


User provided reference genes

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