Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.5e-217 759.2 379 100.0
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.1e-151 540.4 379 74.7
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.9e-151 539.7 379 73.9
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 5.3e-114 415.2 378 62.4
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.3e-108 396.0 379 61.2
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.4e-106 390.6 379 60.7
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.9e-105 385.2 379 60.2
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.5e-104 381.3 379 59.4
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.7e-94 349.0 357 58.8
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 8.0e-86 321.6 384 49.0
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 8.0e-78 295.0 383 46.7
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.4e-77 294.3 384 48.2
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 3.7e-75 286.2 399 45.6
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 5.0e-72 275.8 387 46.5
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.2e-70 271.2 385 47.0
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.0e-69 268.1 380 44.7
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.8e-69 267.3 387 47.5
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 4.0e-69 266.2 339 47.8
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 8.3e-67 258.5 387 46.3
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 7.0e-66 255.4 384 44.0
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.9e-63 247.3 367 46.6
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.6e-62 244.2 390 42.8
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 4.7e-62 242.7 381 46.2
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.0e-61 241.5 380 45.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 5.2e-61 239.2 376 45.7
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 8.9e-61 238.4 393 42.7
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.3e-59 234.6 398 43.0
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.8e-58 230.7 399 42.4
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 3.1e-58 229.9 382 43.2
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 5.9e-57 225.7 398 42.5
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 5.9e-57 225.7 379 42.5
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.7e-56 224.2 385 41.6
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 2.3e-56 223.8 387 40.8
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 5.0e-56 222.6 384 42.7
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.9e-55 220.7 377 41.4
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.2e-54 218.0 388 40.5
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.8e-54 216.9 400 40.5
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.7e-54 216.1 378 42.1
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.7e-54 216.1 377 41.9
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.7e-54 216.1 377 41.9
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 2.6e-52 210.3 378 39.4
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 7.5e-52 208.8 382 40.1
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.6e-49 201.1 397 37.0
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 6.6e-48 195.7 178 59.0
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 2.8e-46 190.3 386 38.3
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.6e-46 189.9 375 35.5
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 4.7e-46 189.5 320 42.2
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.4e-45 188.0 393 36.1
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 4.0e-45 186.4 381 36.2
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.2e-44 184.9 349 39.8
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 2.6e-44 183.7 341 39.0
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 7.5e-44 182.2 375 37.1
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.9e-42 177.6 233 45.9
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 4.1e-42 176.4 181 53.0
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 4.6e-41 172.9 357 38.7
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.0e-40 171.8 382 35.1
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 5.1e-40 169.5 368 32.9
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 6.2e-38 162.5 368 34.2
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 8.1e-38 162.2 364 34.1
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.8e-37 161.0 424 31.6
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 3.1e-37 160.2 384 35.4
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.7e-35 154.5 370 33.0
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 3.7e-35 153.3 366 32.0
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 3.7e-35 153.3 366 32.0
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 3.7e-35 153.3 366 32.0
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 3.7e-35 153.3 237 41.4
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 4.9e-35 152.9 368 31.8
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.9e-34 151.0 387 32.3
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 2.4e-34 150.6 365 33.2
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 3.2e-34 150.2 384 32.3
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 4.1e-34 149.8 386 32.4
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 7.1e-34 149.1 375 32.0
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 9.2e-34 148.7 385 33.8
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 9.2e-34 148.7 366 33.3
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 2.7e-33 147.1 381 31.8
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 3.5e-33 146.7 195 44.6
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 4.6e-33 146.4 375 31.7
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-32 144.8 155 49.0
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 1.3e-32 144.8 155 49.0
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.3e-32 144.1 367 32.2
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.0e-32 143.7 368 32.9
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 3.9e-32 143.3 367 32.7
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 5.1e-32 142.9 376 35.1
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 6.6e-32 142.5 379 33.0
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 6.6e-32 142.5 155 48.4
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 6.6e-32 142.5 155 48.4
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 8.6e-32 142.1 170 47.1
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 8.6e-32 142.1 383 31.6
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.1e-31 141.7 356 34.0
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 6.2e-30 136.0 200 43.0
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 1.1e-29 135.2 371 32.6
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.1e-29 133.7 379 31.7
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 4.0e-29 133.3 384 32.3
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 4.0e-29 133.3 387 30.5
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 2.0e-28 131.0 386 31.6
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 2.0e-28 131.0 386 31.6
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 4.4e-28 129.8 175 42.9
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 7.6e-28 129.0 359 30.6
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 2.9e-27 127.1 363 31.7
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 4.9e-27 126.3 148 48.0
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 8.4e-27 125.6 366 33.1
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 1.1e-26 125.2 368 31.2
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.9e-26 124.4 244 36.5
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 2.4e-26 124.0 364 28.3
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.4e-26 124.0 371 31.0
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 2.4e-26 124.0 386 30.6
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 4.2e-26 123.2 363 30.0
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 5.4e-26 122.9 364 28.0
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.2e-25 121.7 378 30.4
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.2e-25 121.7 386 31.9
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.5e-25 120.2 292 33.9
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 4.6e-25 119.8 376 33.2
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 4.6e-25 119.8 180 39.4
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.3e-24 117.5 164 42.1
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.3e-24 117.5 360 31.7
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 8.7e-24 115.5 356 32.0
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.1e-23 115.2 415 28.0
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.9e-23 114.4 418 30.9
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.9e-23 114.4 355 33.5
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 9.6e-23 112.1 142 43.7
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.8e-22 110.5 298 33.9
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 4.7e-22 109.8 357 32.5
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 4.0e-21 106.7 116 46.6
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 5.3e-21 106.3 159 45.9
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.2e-20 105.1 261 31.4
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.2e-20 105.1 181 38.7
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 1.7e-19 101.3 385 29.9
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.2e-19 100.9 120 48.3
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 2.4e-18 97.4 341 30.2
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.0e-16 90.5 295 32.5
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 9.6e-15 85.5 127 38.6
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.8e-14 83.2 117 44.4
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 5.3e-13 79.7 361 28.5
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 1.5e-12 78.2 90 41.1
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.2e-11 74.3 288 29.9
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 2.9e-11 73.9 214 33.2
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.4e-10 71.6 143 37.1
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.2e-10 70.1 377 27.3
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 7.1e-10 69.3 131 32.1
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 9.3e-10 68.9 112 37.5
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 4.8e-06 56.6 43 58.1


User provided reference genes

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