Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 3.5e-61 238.0 114 100.0
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 1.7e-60 235.7 114 98.2
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 5.6e-35 151.0 69 97.1
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 1.5e-27 126.3 119 53.8
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 3.1e-25 118.6 118 52.5
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 9.9e-24 113.6 121 49.6
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 1.7e-23 112.8 110 48.2
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 6.0e-21 104.4 111 45.0
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.3e-20 103.2 112 43.8
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.3e-20 102.4 116 44.8
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 3.0e-20 102.1 104 45.2
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 3.0e-20 102.1 102 45.1
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.9e-20 101.7 116 46.6
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 8.7e-20 100.5 115 44.3
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.3e-19 98.6 107 44.9
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 3.3e-19 98.6 106 46.2
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 4.3e-19 98.2 115 43.5
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.6e-18 96.3 101 44.6
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 2.1e-18 95.9 114 46.5
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 6.2e-18 94.4 112 42.9
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 8.1e-18 94.0 107 42.1
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 8.1e-18 94.0 112 42.0
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 1.4e-17 93.2 114 40.4
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 1.8e-17 92.8 117 44.4
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 3.1e-17 92.0 106 45.3
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 3.1e-17 92.0 116 44.0
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 4.0e-17 91.7 114 44.7
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 5.3e-17 91.3 111 42.3
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 6.9e-17 90.9 113 41.6
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 9.0e-17 90.5 126 42.9
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 1.5e-16 89.7 109 39.4
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 1.5e-16 89.7 109 39.4
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.0e-16 89.4 112 44.6
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 2.6e-16 89.0 109 38.5
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 2.6e-16 89.0 114 41.2
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 3.4e-16 88.6 117 41.0
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 7.6e-16 87.4 114 45.6
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 9.9e-16 87.0 112 41.1
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 1.3e-15 86.7 95 42.1
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 1.3e-15 86.7 121 39.7
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 2.2e-15 85.9 104 39.4
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 2.2e-15 85.9 119 42.0
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 4.9e-15 84.7 116 38.8
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 6.4e-15 84.3 92 46.7
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 6.4e-15 84.3 103 39.8
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 3.2e-14 82.0 118 39.8
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 4.2e-14 81.6 113 41.6
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 5.4e-14 81.3 118 39.8
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.2e-13 80.1 124 39.5
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 2.1e-13 79.3 118 39.0
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 2.7e-13 79.0 116 37.9
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 2.7e-13 79.0 116 37.9
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 3.5e-13 78.6 126 38.9
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 6.0e-13 77.8 116 37.1
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 6.0e-13 77.8 108 41.7
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.3e-12 76.6 97 40.2
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 1.3e-12 76.6 113 38.1
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 2.3e-12 75.9 92 43.5
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 3.0e-12 75.5 116 38.8
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.9e-12 75.1 116 38.8
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 6.7e-12 74.3 116 38.8
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 6.7e-12 74.3 134 33.6
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 8.7e-12 73.9 85 41.2
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 8.7e-12 73.9 108 41.7
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 8.7e-12 73.9 114 34.2
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 1.5e-11 73.2 96 41.7
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 1.5e-11 73.2 124 36.3
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.5e-11 72.4 109 40.4
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.5e-11 72.4 108 39.8
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.5e-11 72.4 116 35.3
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.3e-11 72.0 117 35.9
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 3.3e-11 72.0 112 35.7
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 4.3e-11 71.6 113 35.4
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 4.3e-11 71.6 115 36.5
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 5.6e-11 71.2 116 35.3
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 5.6e-11 71.2 121 35.5
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 5.6e-11 71.2 108 38.9
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 5.6e-11 71.2 108 38.9
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 9.6e-11 70.5 64 56.2
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 9.6e-11 70.5 135 31.9
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.3e-10 70.1 111 38.7
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 2.1e-10 69.3 65 50.8
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.8e-10 68.9 112 36.6
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 2.8e-10 68.9 114 35.1
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.6e-10 68.6 114 39.5
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.6e-10 68.6 127 33.1
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 6.2e-10 67.8 111 33.3
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 6.2e-10 67.8 113 33.6
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 8.1e-10 67.4 118 31.4
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 8.1e-10 67.4 112 32.1
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.1e-09 67.0 121 35.5
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.1e-09 67.0 108 34.3
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.4e-09 66.6 83 39.8
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.4e-09 66.6 86 39.5
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.4e-09 66.6 112 37.5
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.8e-09 66.2 117 30.8
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 1.8e-09 66.2 116 33.6
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 2.4e-09 65.9 108 35.2
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 2.4e-09 65.9 122 34.4
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.1e-09 65.5 102 37.3
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.1e-09 65.5 117 29.9
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.1e-09 65.5 87 41.4
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 4.0e-09 65.1 114 36.0
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 4.0e-09 65.1 114 32.5
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 5.3e-09 64.7 123 34.1
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 5.3e-09 64.7 117 29.9
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 5.3e-09 64.7 92 37.0
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 6.9e-09 64.3 129 33.3
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 6.9e-09 64.3 123 33.3
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 6.9e-09 64.3 115 39.1
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 9.0e-09 63.9 119 32.8
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.2e-08 63.5 68 45.6
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-08 63.2 129 31.0
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-08 62.8 129 31.0
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-08 62.8 127 33.1
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-08 62.8 127 33.1
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 2.6e-08 62.4 118 30.5
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.6e-08 62.4 107 37.4
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 3.4e-08 62.0 94 33.0
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 3.4e-08 62.0 129 31.0
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 3.4e-08 62.0 131 32.1
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 4.5e-08 61.6 132 32.6
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.5e-08 61.6 86 34.9
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.5e-08 61.6 64 42.2
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 5.8e-08 61.2 116 33.6
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.8e-08 61.2 110 31.8
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 5.8e-08 61.2 113 31.9
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 7.6e-08 60.8 94 35.1
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 9.9e-08 60.5 135 31.1
CsaV3_7G033040 Cucumis sativus L. HOM05D005672 ORTHO05D003038 1.3e-07 60.1 115 35.7
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 2.2e-07 59.3 108 35.2
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 2.9e-07 58.9 118 32.2
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.9e-07 58.9 68 44.1
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 2.9e-07 58.9 109 33.0
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 3.8e-07 58.5 122 32.0
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 4.9e-07 58.2 122 32.8
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 4.9e-07 58.2 136 31.6
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 4.9e-07 58.2 108 31.5
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 6.4e-07 57.8 96 39.6
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 8.4e-07 57.4 116 32.8
Sed0015260 Sechium edule HOM05D005672 ORTHO05D003038 8.4e-07 57.4 114 30.7
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 1.1e-06 57.0 127 33.9
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.1e-06 57.0 123 31.7
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 1.9e-06 56.2 106 31.1
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 2.4e-06 55.8 111 32.4
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 2.4e-06 55.8 107 33.6
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 4.2e-06 55.1 105 32.4
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.5e-06 54.7 103 31.1
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 7.1e-06 54.3 111 31.5
Potri.003G056450 Populus trichocarpa HOM05D005672 ORTHO05D003038 7.1e-06 54.3 91 35.2
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 9.3e-06 53.9 95 33.7


User provided reference genes

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