Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 2.3e-128 462.2 236 100.0
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.2e-100 370.2 236 78.0
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-98 363.6 234 76.9
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.1e-98 363.6 225 78.7
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-98 362.8 233 76.0
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 3.3e-98 362.1 234 76.1
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 4.3e-98 361.7 233 76.4
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 7.4e-98 360.9 233 77.3
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-97 360.1 234 76.1
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.2e-97 357.8 234 76.1
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.0e-95 352.8 234 75.2
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 5.8e-95 351.3 224 75.4
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 3.8e-94 348.6 233 72.1
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 9.3e-93 344.0 224 74.6
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.6e-92 343.2 224 74.1
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 3.5e-92 342.0 230 73.0
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 4.6e-92 341.7 224 73.7
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.0e-91 340.5 234 70.5
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-91 340.1 202 81.7
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.0e-91 339.0 234 70.5
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 5.1e-91 338.2 236 71.2
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 5.7e-90 334.7 224 72.8
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 9.6e-90 334.0 224 73.2
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.3e-89 333.6 224 72.3
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.3e-89 333.6 225 72.9
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.3e-89 333.6 224 70.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.7e-89 332.0 224 72.3
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.1e-88 330.5 220 72.3
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 1.4e-88 330.1 224 71.9
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.8e-88 329.7 224 70.5
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.8e-88 329.7 224 71.4
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 6.9e-88 327.8 224 71.0
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 9.0e-88 327.4 227 69.2
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.5e-87 326.6 225 68.0
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 2.0e-87 326.2 223 70.9
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 4.5e-87 325.1 236 66.1
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 5.8e-87 324.7 224 70.1
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 7.6e-87 324.3 223 69.1
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.3e-86 323.6 224 69.2
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.7e-86 323.2 225 71.1
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.7e-86 323.2 222 69.8
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.2e-86 322.8 224 70.5
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.2e-86 322.8 222 73.0
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.2e-86 322.8 233 67.4
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 6.5e-86 321.2 223 70.9
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 8.4e-86 320.9 224 69.6
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 8.4e-86 320.9 224 67.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.1e-85 320.5 224 69.6
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.1e-85 320.5 224 68.8
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.4e-85 320.1 222 72.1
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.9e-85 319.7 230 67.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.9e-85 319.7 222 72.1
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.5e-85 319.3 234 67.5
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.5e-85 319.3 222 72.5
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.5e-85 319.3 222 68.0
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 3.2e-85 318.9 224 67.9
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 3.2e-85 318.9 223 68.6
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 3.2e-85 318.9 224 67.4
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.2e-85 318.9 224 67.4
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 4.2e-85 318.5 219 73.1
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 4.2e-85 318.5 235 66.0
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 4.2e-85 318.5 227 66.1
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.5e-85 318.2 224 68.8
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 5.5e-85 318.2 223 69.5
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.5e-85 318.2 218 71.6
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 7.1e-85 317.8 224 68.3
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 7.1e-85 317.8 224 69.6
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 9.3e-85 317.4 224 67.9
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.2e-84 317.0 223 67.7
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.2e-84 317.0 224 67.0
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.2e-84 317.0 222 71.6
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.6e-84 316.6 224 67.4
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 2.7e-84 315.8 223 68.6
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 6.1e-84 314.7 224 68.8
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 6.1e-84 314.7 225 67.1
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 1.0e-83 313.9 229 69.0
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 1.3e-83 313.5 228 66.7
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.8e-83 313.2 224 68.3
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.3e-83 312.8 224 68.3
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.0e-83 312.4 224 67.0
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.1e-83 311.6 233 68.2
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 6.7e-83 311.2 223 68.2
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 6.7e-83 311.2 224 69.6
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 8.7e-83 310.8 224 65.2
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.1e-82 310.5 223 68.6
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.9e-82 309.7 229 68.1
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.3e-82 308.9 223 67.7
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-82 308.9 235 65.5
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 7.4e-82 307.8 224 67.4
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.3e-81 307.0 222 67.6
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.2e-81 306.2 223 66.8
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 2.2e-81 306.2 223 67.7
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 2.8e-81 305.8 224 64.7
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 2.8e-81 305.8 223 68.2
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 3.7e-81 305.4 223 66.8
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.1e-80 303.9 222 67.6
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.8e-80 303.1 223 66.4
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.4e-80 302.8 224 67.4
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.1e-80 302.0 224 65.6
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 4.1e-80 302.0 223 65.9
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 5.3e-80 301.6 225 64.0
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.0e-79 299.7 259 58.7
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 5.9e-79 298.1 223 66.8
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 7.7e-79 297.7 223 66.4
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.0e-78 297.4 225 64.4
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.7e-78 296.6 223 66.4
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.2e-78 296.2 223 65.9
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.2e-78 296.2 223 65.9
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 8.5e-78 294.3 223 66.4
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 8.5e-78 294.3 223 65.9
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 8.5e-78 294.3 221 62.9
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 3.2e-77 292.4 223 65.5
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 9.4e-77 290.8 224 65.2
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.2e-76 290.4 195 70.8
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 3.6e-76 288.9 210 66.7
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 6.1e-76 288.1 204 70.1
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 5.1e-75 285.0 224 59.4
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.7e-75 284.6 318 48.4
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.4e-74 281.2 221 63.3
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 3.7e-73 278.9 224 58.5
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 4.8e-73 278.5 204 65.2
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 6.9e-72 274.6 223 61.4
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.2e-71 273.9 229 61.1
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 2.9e-70 269.2 233 60.5
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.4e-69 266.9 188 67.6
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.8e-67 260.0 215 60.0
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.8e-65 252.7 192 63.5
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 8.2e-65 251.1 147 81.0
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.8e-62 242.3 176 64.8
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 9.4e-61 237.7 232 55.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.8e-59 231.1 144 76.4
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 7.5e-58 228.0 220 52.3
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.7e-57 226.9 180 62.8
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 8.2e-57 224.6 223 51.6
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.1e-56 224.2 221 53.4
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-55 219.5 124 84.7
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.9e-54 216.1 133 75.2
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 3.2e-53 212.6 213 51.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.2e-52 210.7 215 51.6
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 2.6e-50 203.0 144 70.1
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 4.2e-45 185.7 119 75.6
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 9.8e-42 174.5 140 58.6
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 9.1e-40 167.9 134 61.2
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 2.0e-39 166.8 138 60.1
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.0e-39 166.8 135 59.3
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 2.7e-39 166.4 137 59.1
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 5.0e-38 162.2 146 54.8
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 8.6e-38 161.4 126 65.1
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 3.3e-37 159.5 139 53.2
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 4.3e-37 159.1 191 45.0
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 4.4e-34 149.1 185 42.2
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 4.9e-33 145.6 191 42.9
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.0e-30 137.9 130 52.3
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.0e-30 137.9 85 76.5
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.3e-30 137.5 85 74.1
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.3e-30 137.5 88 75.0
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 1.9e-29 133.7 109 62.4
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.0e-27 127.9 102 63.7
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.0e-27 127.9 69 87.0
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.8e-27 127.1 82 74.4
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 8.9e-27 124.8 85 71.8
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.3e-25 120.9 85 67.1
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.7e-25 120.6 93 60.2
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.9e-25 119.8 90 66.7
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.4e-25 118.6 85 70.6
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.1e-24 117.9 95 63.2
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 3.5e-23 112.8 103 52.4
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.3e-22 110.2 68 76.5
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 3.0e-22 109.8 77 70.1
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-20 104.4 147 42.2
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.2e-20 104.4 85 61.2
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 3.6e-20 102.8 100 57.0
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-18 97.1 90 58.9
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-15 87.8 99 50.5
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.2e-15 87.8 59 71.2
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-14 83.6 60 66.7
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 5.1e-14 82.4 51 74.5
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 3.6e-12 76.3 220 27.7
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.1e-11 74.7 182 27.5
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.2e-11 72.4 70 54.3
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 6.4e-09 65.5 49 59.2
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 2.4e-08 63.5 67 46.3


User provided reference genes

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