Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G178600 Prunus persica HOM05D006522 ORTHO05D008183 7.1e-139 497.3 254 100.0
MD15G1329600 Malus domestica HOM05D006522 ORTHO05D008183 5.5e-115 417.9 273 81.0
FvH4_1g21690 Fragaria vesca HOM05D006522 ORTHO05D008183 9.0e-110 400.6 269 74.7
RcHm_v2.0_Chr2g0115571 Rosa chinensis HOM05D006522 ORTHO05D008183 2.9e-108 395.6 267 74.9
CANSAT01G1323 Cannabis sativa HOM05D006522 ORTHO05D008183 1.0e-100 370.5 269 71.7
CiPaw.04G095200 Carya illinoinensis HOM05D006522 ORTHO05D008183 1.1e-99 367.1 268 70.9
Medtr8g091510 Medicago truncatula HOM05D006522 ORTHO05D008183 1.9e-99 366.3 272 69.5
FAN26G1180 Fragaria x ananassa HOM05D006522 ORTHO05D008183 2.5e-99 365.9 332 60.5
Gohir.A02G132900 Gossypium hirsutum HOM05D006522 ORTHO05D008183 4.2e-99 365.2 268 71.6
Gohir.D03G044300 Gossypium hirsutum HOM05D006522 ORTHO05D008183 4.2e-99 365.2 268 71.6
Potri.005G080300 Populus trichocarpa HOM05D006522 ORTHO05D008183 1.6e-98 363.2 269 71.4
CSS0003121 Camellia sinensis var. sinensis HOM05D006522 ORTHO05D008183 3.6e-98 362.1 284 68.3
Thecc.01G107900 Theobroma cacao HOM05D006522 ORTHO05D008183 3.6e-98 362.1 267 72.3
Ciclev10027591m.g Citrus clementina HOM05D006522 ORTHO05D008183 1.8e-97 359.8 283 69.6
Lj4g0021245 Lotus japonicus HOM05D006522 ORTHO05D008183 3.9e-97 358.6 273 68.5
Duzib187G0580 Durio zibethinus HOM05D006522 ORTHO05D008183 6.7e-97 357.8 266 70.3
Eucgr.I00376 Eucalyptus grandis HOM05D006522 ORTHO05D008183 9.7e-96 354.0 275 67.6
Glyma.08G139500 Glycine max HOM05D006522 ORTHO05D008183 2.8e-95 352.4 214 79.4
QL06p050567 Quercus lobata HOM05D006522 ORTHO05D008183 2.8e-95 352.4 315 62.9
Sed0017006 Sechium edule HOM05D006522 ORTHO05D008183 1.8e-94 349.7 268 67.9
Glyma.05G181800 Glycine max HOM05D006522 ORTHO05D008183 5.3e-94 348.2 214 77.6
Lalb_Chr12g0203641 Lupinus albus HOM05D006522 ORTHO05D008183 6.9e-94 347.8 272 66.9
TWI53G0226 Tripterygium wilfordii HOM05D006522 ORTHO05D008183 6.9e-94 347.8 266 67.7
THA.LOC104819310 Tarenaya hassleriana HOM05D006522 ORTHO05D008183 9.1e-94 347.4 215 78.6
Ca_17709_v3 Cicer arietinum L. HOM05D006522 ORTHO05D008183 2.0e-93 346.3 273 65.6
VMungo0251G3519 Vigna mungo HOM05D006522 ORTHO05D008183 2.0e-93 346.3 268 66.4
Thhalv10014396m.g Eutrema salsugineum HOM05D006522 ORTHO05D008183 5.9e-93 344.7 220 76.8
Psat7g053400 Pisum sativum HOM05D006522 ORTHO05D008183 5.9e-93 344.7 269 66.2
Hma1.2p1_0070F.1_g037610 Hydrangea macrophylla HOM05D006522 ORTHO05D008183 7.7e-93 344.4 273 67.0
CARHR203220 Cardamine hirsuta HOM05D006522 ORTHO05D008183 3.8e-92 342.0 212 76.4
Os03g0195200 Oryza sativa ssp. japonica HOM05D006522 ORTHO05D008183 8.5e-92 340.9 214 77.6
arahy.Tifrunner.gnm1.ann1.8IYW0J Arachis hypogaea HOM05D006522 ORTHO05D008183 1.9e-91 339.7 279 64.5
Sc23g0003650 Simmondsia chinensis HOM05D006522 ORTHO05D008183 2.5e-91 339.3 267 65.9
Phvul.002G262800 Phaseolus vulgaris HOM05D006522 ORTHO05D008183 3.2e-91 339.0 271 63.8
BcaC04g19347 Brassica carinata HOM05D006522 ORTHO05D008183 4.2e-91 338.6 211 75.8
BolC9t59510H Brassica oleracea HOM05D006522 ORTHO05D008183 4.2e-91 338.6 211 75.8
C09p67500 Brassica napus HOM05D006522 ORTHO05D008183 5.5e-91 338.2 211 75.8
AL6G20520 Arabidopsis lyrata HOM05D006522 ORTHO05D008183 7.2e-91 337.8 215 74.9
Manes.13G077900 Manihot esculenta HOM05D006522 ORTHO05D008183 7.2e-91 337.8 298 61.7
Sp6g33330 Schrenkiella parvula HOM05D006522 ORTHO05D008183 7.2e-91 337.8 222 76.1
Zm00001eb401110 Zea mays HOM05D006522 ORTHO05D008183 9.4e-91 337.4 205 77.1
Carub.0006s0853 Capsella rubella HOM05D006522 ORTHO05D008183 2.7e-90 335.9 267 64.4
Dinv16321 Davidia involucrata HOM05D006522 ORTHO05D008183 2.7e-90 335.9 265 66.8
Aa31LG3G17070 Aethionema arabicum HOM05D006522 ORTHO05D008183 4.7e-90 335.1 215 74.4
Actinidia28878 Actinidia chinensis HOM05D001075 ORTHO05D008183 7.9e-90 334.3 266 66.9
AUR62013645 Chenopodium quinoa HOM05D006522 ORTHO05D008183 7.9e-90 334.3 215 74.4
PSO675G0908 Papaver somniferum HOM05D006522 ORTHO05D008183 1.4e-89 333.6 275 64.7
PSO541G5899 Papaver somniferum HOM05D006522 ORTHO05D008183 1.8e-89 333.2 274 64.6
BraA10t44795Z Brassica rapa HOM05D006522 ORTHO05D008183 2.3e-89 332.8 211 74.9
ECA238G0371 Erigeron canadensis HOM05D006522 ORTHO05D008183 3.0e-89 332.4 216 76.4
GSVIVG01022189001 Vitis vinifera HOM05D006522 ORTHO05D008183 6.7e-89 331.3 300 61.0
Nitab4.5_0001027g0010 Nicotiana tabacum HOM05D006522 ORTHO05D008183 1.1e-88 330.5 270 64.4
FAN19G2878 Fragaria x ananassa HOM05D006522 ORTHO05D008183 1.5e-88 330.1 308 60.1
MELO3C017578.2 Cucumis melo HOM05D006522 ORTHO05D008183 2.0e-88 329.7 313 60.1
vmacro12933 Vaccinium macrocarpon HOM05D006522 ORTHO05D008183 2.0e-88 329.7 264 65.2
Gorai.003G045400 Gossypium raimondii HOM05D006522 ORTHO05D008183 3.3e-88 328.9 268 66.8
Cc00_g21690 Coffea canephora HOM05D006522 ORTHO05D008183 7.4e-88 327.8 231 72.3
PGSC0003DMG400023383 Solanum tuberosum HOM05D006522 ORTHO05D008183 7.4e-88 327.8 271 63.5
Sopen05g033820 Solanum pennellii HOM05D006522 ORTHO05D008183 9.7e-88 327.4 271 63.1
MSTRG.23326 Avicennia marina HOM05D006522 ORTHO05D008183 1.7e-87 326.6 216 75.0
HPP92_027257 Vanilla planifolia HOM05D006522 ORTHO05D008183 2.2e-87 326.2 217 73.7
BcaB08g37142 Brassica carinata HOM05D006522 ORTHO05D008183 3.7e-87 325.5 199 77.4
Nitab4.5_0003396g0010 Nicotiana tabacum HOM05D006522 ORTHO05D008183 4.8e-87 325.1 270 64.1
HanXRQChr14g0446011 Helianthus annuus HOM05D006522 ORTHO05D008183 6.3e-87 324.7 267 64.0
Ah.05g174330 Amaranthus hybridus HOM05D006522 ORTHO05D008183 8.2e-87 324.3 267 63.7
Rhsim10G0156200 Rhododendron simsii HOM05D006522 ORTHO05D008183 1.4e-86 323.6 351 55.0
EL10Ac1g00879 Beta vulgaris HOM05D006522 ORTHO05D008183 1.8e-86 323.2 271 62.7
CAN.G1550.13 Capsicum annuum HOM05D006522 ORTHO05D008183 3.1e-86 322.4 271 63.1
TPR.G2232 Trifolium pratense HOM05D006522 ORTHO05D008183 4.1e-86 322.0 265 64.5
TAR376G0333 Trochodendron aralioides HOM05D006522 ORTHO05D008183 1.2e-85 320.5 222 72.5
COL.COLO4_11046 Corchorus olitorius HOM05D006522 ORTHO05D008183 5.9e-85 318.2 194 82.0
CsaV3_UNG186480 Cucumis sativus L. HOM05D006522 ORTHO05D008183 1.0e-84 317.4 202 77.2
Sabra05G0065900 Salix brachista HOM05D006522 ORTHO05D008183 1.1e-83 313.9 258 65.9
Atru.chr4.281 Acer truncatum HOM05D006522 ORTHO05D008183 5.5e-83 311.6 256 65.6
PGR004G1063 Punica granatum HOM05D006522 ORTHO05D008183 7.2e-83 311.2 258 65.1
AUR62004203 Chenopodium quinoa HOM05D006522 ORTHO05D008183 1.2e-82 310.5 268 61.9
ATR0564G484 Amborella trichopoda HOM05D006522 ORTHO05D008183 2.1e-82 309.7 246 64.2
Migut.H02394 Erythranthe guttata HOM05D006522 ORTHO05D008183 1.8e-81 306.6 216 71.3
Lj2A556G28 Lonicera japonica HOM05D006522 ORTHO05D008183 8.8e-81 304.3 223 70.0
SGA_v2.0_scaffold2G01317 Striga asiatica HOM05D006522 ORTHO05D008183 2.0e-80 303.1 214 69.2
Cfa002723 Carpinus fangiana HOM05D006522 ORTHO05D008183 3.3e-80 302.4 191 78.5
arahy.Tifrunner.gnm1.ann1.2EL0K0 Arachis hypogaea HOM05D006522 ORTHO05D008183 9.7e-80 300.8 183 79.2
Nn5g28991 Nelumbo nucifera HOM05D006522 ORTHO05D008183 1.3e-79 300.4 257 62.3
Hma1.2p1_0070F.1_g037620 Hydrangea macrophylla HOM05D006522 ORTHO05D008183 1.7e-79 300.1 259 62.5
Aqoxy6G00537 Aquilegia oxysepala HOM05D006522 ORTHO05D008183 8.2e-79 297.7 189 76.2
Oeu028389.1 Olea europaea HOM05D006522 ORTHO05D008183 3.1e-78 295.8 175 81.1
SalBow3G1116 Salvia bowleyana HOM05D006522 ORTHO05D008183 2.0e-77 293.1 195 73.8
Mapoly0168s0016 Marchantia polymorpha HOM05D006522 ORTHO05D008183 3.6e-74 282.3 209 65.6
Psat7g089320 Pisum sativum HOM05D006522 ORTHO05D008183 2.4e-70 269.6 226 62.4
AUR62013648 Chenopodium quinoa HOM05D006522 ORTHO05D008183 9.1e-70 267.7 213 64.8
SMO139G0021 Selaginella moellendorffii HOM05D006522 ORTHO05D008183 2.0e-69 266.5 210 60.0
Pp3c17_17150 Physcomitrium patens HOM05D006522 ORTHO05D008183 9.4e-67 257.7 210 60.5
A10p27440 Brassica napus HOM05D006522 ORTHO05D008183 1.6e-66 256.9 138 84.8
AT5G10070 Arabidopsis thaliana HOM05D006522 ORTHO05D008183 2.1e-66 256.5 136 86.0
unitig_736.g22572 Utricularia gibba HOM05D006522 ORTHO05D008183 4.0e-65 252.3 217 59.9
Lsat_1_v5_gn_2_67761 Lactuca sativa HOM05D006522 ORTHO05D008183 2.2e-63 246.5 209 65.1
ECA238G2930 Erigeron canadensis HOM05D006522 ORTHO05D008183 1.4e-62 243.8 136 81.6
ClCG09G014260 Citrullus lanatus HOM05D006522 ORTHO05D008183 3.8e-60 235.7 275 52.7
BcaB08g37140 Brassica carinata HOM05D006522 ORTHO05D008183 5.0e-60 235.3 151 72.8
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.1e-59 234.2 235 48.1
MD01G1023100 Malus domestica HOM05D006522 ORTHO05D008183 1.6e-58 230.3 136 86.8
MCO11G860 Micromonas commoda HOM05D006522 ORTHO05D008183 8.3e-55 218.0 215 47.0
Cre17.g698950 Chlamydomonas reinhardtii HOM05D006522 ORTHO05D008183 2.5e-51 206.5 163 57.7
Haze_26963 Corylus avellana HOM05D006522 ORTHO05D008183 5.6e-51 205.3 209 48.8
CDE10G0337 Ceratophyllum demersum HOM05D006522 ORTHO05D008183 9.5e-51 204.5 187 61.5
PRCOL_00002914 Prasinoderma coloniale HOM05D006522 ORTHO05D008183 3.4e-48 196.1 201 49.8
Haze_24999 Corylus avellana HOM05D006522 ORTHO05D008183 1.0e-36 157.9 178 52.8
Cfa022135 Carpinus fangiana HOM05D006522 ORTHO05D008183 3.0e-36 156.4 224 36.6
Eucgr.L02916 Eucalyptus grandis HOM05D006522 ORTHO05D008183 8.1e-34 148.3 107 69.2
AUR62004200 Chenopodium quinoa HOM05D006522 ORTHO05D008183 1.3e-31 141.0 221 41.2
MD01G1023200 Malus domestica HOM05D006522 ORTHO05D008183 1.3e-23 114.4 63 87.3
SEGI_11019 Sequoiadendron giganteum HOM05D006522 ORTHO05D008183 2.9e-23 113.2 56 89.3
SHI11627 Sapria himalayana HOM05D006522 ORTHO05D008183 8.4e-23 111.7 96 55.2
COL.COLO4_11047 Corchorus olitorius HOM05D006522 ORTHO05D008183 2.3e-20 103.6 102 60.8
SHI11626 Sapria himalayana HOM05D006522 ORTHO05D008183 5.1e-20 102.4 59 76.3
Potri.007G087000 Populus trichocarpa HOM05D006522 ORTHO05D008183 2.8e-18 96.7 79 65.8
SEGI_36547 Sequoiadendron giganteum HOM05D006522 ORTHO05D008183 3.6e-18 96.3 88 54.5
AagrBONN_evm.TU.Sc2ySwM_368.3361 Anthoceros agrestis HOM05D006522 ORTHO05D008183 1.2e-13 81.3 89 44.9
DCAR_011494 Daucus carota HOM05D006522 ORTHO05D008183 1.7e-07 60.8 62 50.0


User provided reference genes

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