Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 1.5e-149 533.1 330 100.0
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 4.2e-107 392.1 347 65.1
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 1.2e-106 390.6 347 66.0
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 1.6e-106 390.2 347 64.8
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.1e-106 389.8 347 64.8
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.7e-106 389.4 347 64.8
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 1.3e-105 387.1 332 70.5
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 4.2e-91 339.0 340 59.1
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 3.9e-89 332.4 346 59.2
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 9.7e-88 327.8 340 57.6
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 9.7e-88 327.8 346 58.7
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 1.6e-87 327.0 334 57.5
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 1.6e-87 327.0 350 56.6
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 2.2e-87 326.6 345 58.0
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 9.0e-86 321.2 331 58.0
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 9.0e-86 321.2 336 58.6
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 1.5e-85 320.5 349 57.3
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.7e-84 317.0 345 55.9
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 2.9e-84 316.2 345 55.7
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 6.5e-84 315.1 332 54.5
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.4e-83 313.9 331 57.4
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 3.6e-82 309.3 334 56.3
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 7.9e-82 308.1 333 56.2
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 5.1e-81 305.4 331 55.6
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 2.5e-80 303.1 348 53.4
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 3.3e-80 302.8 333 55.9
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 4.8e-79 298.9 346 54.9
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 1.4e-78 297.4 333 54.7
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 1.4e-78 297.4 338 54.1
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 1.8e-78 297.0 341 54.5
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 6.9e-78 295.0 331 53.2
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 9.1e-78 294.7 331 55.0
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 1.5e-77 293.9 333 52.6
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 2.0e-77 293.5 332 53.0
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 3.4e-77 292.7 331 54.1
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 5.9e-77 292.0 333 53.2
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 1.7e-76 290.4 330 57.3
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 1.7e-76 290.4 331 53.2
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 5.0e-76 288.9 340 53.8
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 6.5e-76 288.5 345 54.5
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 8.5e-76 288.1 333 53.2
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 1.4e-75 287.3 349 50.4
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 1.4e-75 287.3 349 50.4
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 1.4e-75 287.3 328 51.8
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 1.9e-75 287.0 333 53.5
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.9e-75 287.0 329 52.6
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 2.5e-75 286.6 343 52.8
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 2.5e-75 286.6 329 54.4
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.5e-75 286.6 333 53.8
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 2.5e-75 286.6 350 51.4
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 3.2e-75 286.2 329 52.3
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 9.4e-75 284.6 331 56.8
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 9.4e-75 284.6 337 61.1
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 1.6e-74 283.9 332 52.1
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 2.3e-73 280.0 371 48.0
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 2.3e-73 280.0 331 55.9
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 3.0e-73 279.6 334 53.3
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 3.0e-73 279.6 332 51.5
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 5.1e-73 278.9 331 52.9
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 5.1e-73 278.9 209 68.4
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 8.8e-73 278.1 331 54.4
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 1.1e-72 277.7 334 51.8
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 1.5e-72 277.3 376 47.6
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 3.3e-72 276.2 348 50.3
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 3.3e-72 276.2 330 53.0
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 7.4e-72 275.0 333 52.6
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 1.7e-71 273.9 337 52.2
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 2.2e-71 273.5 334 52.7
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 8.2e-71 271.6 329 55.0
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 8.2e-71 271.6 329 55.0
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 1.4e-70 270.8 339 50.1
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 4.1e-70 269.2 333 51.4
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 5.3e-70 268.9 330 53.0
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 7.0e-70 268.5 333 59.5
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 1.2e-69 267.7 335 54.0
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 2.0e-69 266.9 343 56.0
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.3e-68 264.2 336 53.9
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 1.7e-68 263.8 296 55.4
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 6.5e-68 261.9 202 68.8
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 2.5e-67 260.0 301 54.2
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 7.2e-67 258.5 345 47.5
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 9.4e-67 258.1 333 47.7
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 2.1e-66 256.9 338 49.7
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 4.7e-66 255.8 209 65.6
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 6.1e-66 255.4 330 52.4
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 6.7e-65 251.9 297 54.5
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 6.7e-65 251.9 333 58.6
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 2.6e-64 250.0 345 47.8
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 1.7e-63 247.3 336 48.5
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 1.7e-63 247.3 332 53.6
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 3.7e-63 246.1 204 64.7
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 1.1e-62 244.6 281 52.0
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 1.1e-62 244.6 340 48.5
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 2.4e-62 243.4 281 52.7
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 4.1e-62 242.7 336 47.9
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 5.3e-62 242.3 348 45.7
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 2.6e-61 240.0 334 46.4
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 3.5e-61 239.6 333 44.1
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 2.2e-60 236.9 201 63.7
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 2.2e-60 236.9 201 63.7
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 2.9e-60 236.5 196 65.8
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 2.9e-60 236.5 196 65.8
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 6.5e-60 235.3 329 51.1
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 8.5e-60 235.0 336 47.0
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 2.3e-57 226.9 203 62.1
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 5.7e-56 222.2 204 59.3
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 9.8e-56 221.5 207 60.4
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 2.2e-55 220.3 281 48.8
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 1.3e-52 211.1 210 56.2
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 1.7e-52 210.7 329 48.6
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.2e-51 206.1 210 57.1
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 7.2e-51 205.3 288 52.4
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.6e-50 204.1 204 55.9
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.4e-49 201.1 334 41.6
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.3e-49 200.3 189 58.2
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 3.0e-49 199.9 171 64.3
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 9.1e-46 188.3 104 88.5
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 5.9e-45 185.7 338 40.2
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 7.7e-45 185.3 267 47.9
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 1.9e-43 180.6 130 74.6
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 1.8e-41 174.1 291 42.6
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 6.8e-41 172.2 208 48.6
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 6.8e-41 172.2 255 45.9
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 6.3e-39 165.6 212 47.6
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.8e-38 164.1 168 58.3
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 2.7e-37 160.2 215 46.5
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.5e-37 159.8 330 42.7
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 4.6e-37 159.5 286 40.9
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.7e-36 157.5 218 47.2
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 1.7e-36 157.5 97 85.6
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 1.2e-34 151.4 106 70.8
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 2.1e-34 150.6 118 71.2
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 3.6e-34 149.8 95 81.1
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 4.7e-34 149.4 149 57.0
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 5.2e-33 146.0 205 43.9
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 3.4e-32 143.3 98 72.4
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 4.4e-32 142.9 346 35.5
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.3e-31 141.4 228 41.7
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 4.1e-30 136.3 293 40.3
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.2e-29 134.8 243 42.8
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 8.9e-25 118.6 332 33.7
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 6.4e-23 112.5 95 61.1
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 7.8e-21 105.5 149 47.7
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 3.0e-20 103.6 93 57.0
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 1.5e-19 101.3 112 55.4
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 7.6e-16 89.0 71 67.6
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 7.6e-16 89.0 57 78.9
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 3.7e-15 86.7 93 51.6
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 1.1e-09 68.6 53 66.0
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 1.7e-07 61.2 175 34.3
arahy.Tifrunner.gnm1.ann1.1A1X10 Arachis hypogaea HOM05D002737 ORTHO05D005828 4.9e-07 59.7 44 61.4
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 3.2e-06 57.0 65 53.8
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 4.2e-06 56.6 232 28.9


User provided reference genes

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