Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G173600 Prunus persica HOM05D007384 ORTHO05D008511 1.3e-64 250.0 162 100.0
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.6e-35 153.3 162 58.0
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.6e-35 153.3 162 58.6
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 1.6e-35 153.3 162 56.2
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 2.1e-35 152.9 162 58.0
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.8e-34 149.8 162 57.4
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 4.4e-33 145.2 156 68.6
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 3.2e-28 129.0 173 58.4
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 3.1e-23 112.5 164 43.9
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 1.9e-20 103.2 164 41.5
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 7.2e-20 101.3 169 40.2
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 1.6e-19 100.1 174 39.1
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 1.4e-18 97.1 169 38.5
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 2.6e-17 92.8 171 45.0
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 2.6e-17 92.8 171 45.0
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 2.6e-17 92.8 162 35.8
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 3.4e-17 92.4 169 37.3
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 5.7e-17 91.7 156 43.6
Manes.12G142100 Manihot esculenta HOM05D007384 ORTHO05D008511 7.5e-17 91.3 168 57.7
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 2.2e-16 89.7 151 39.7
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 2.8e-16 89.4 164 42.1
TWI74G0307 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 3.7e-16 89.0 164 58.5
Phvul.002G264500 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 8.3e-16 87.8 162 43.2
Gorai.011G111700 Gossypium raimondii HOM05D007384 ORTHO05D008511 1.1e-15 87.4 156 42.3
Lalb_Chr07g0184821 Lupinus albus HOM05D007384 ORTHO05D008511 1.1e-15 87.4 162 48.1
arahy.Tifrunner.gnm1.ann1.AK8RBW Arachis hypogaea HOM05D007384 ORTHO05D008511 2.4e-15 86.3 167 56.9
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 2.4e-15 86.3 165 36.4
Lalb_Chr11g0068051 Lupinus albus HOM05D007384 ORTHO05D008511 3.1e-15 85.9 171 39.2
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 9.1e-15 84.3 162 38.3
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 1.2e-14 84.0 154 40.9
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 2.0e-14 83.2 164 44.5
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 2.2e-13 79.7 163 36.2
Manes.13G077680 Manihot esculenta HOM05D007384 ORTHO05D008511 5.0e-13 78.6 153 44.4
TPR.G40723 Trifolium pratense HOM05D007384 ORTHO05D008511 8.5e-13 77.8 156 35.3
Lalb_Chr12g0203551 Lupinus albus HOM05D007384 ORTHO05D008511 2.5e-12 76.3 167 38.3
Duzib147G1655 Durio zibethinus HOM05D007384 ORTHO05D008511 3.6e-11 72.4 101 43.6
Lj1g0001463 Lotus japonicus HOM05D007384 ORTHO05D008511 3.6e-11 72.4 159 31.4
Atru.chr4.403 Acer truncatum HOM05D007384 ORTHO05D008511 4.7e-11 72.0 169 46.7
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 2.3e-10 69.7 172 32.6
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 1.2e-09 67.4 170 30.6
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 1.2e-09 67.4 174 32.8
Eucgr.I00328 Eucalyptus grandis HOM05D007384 ORTHO05D008511 2.0e-09 66.6 160 49.4
TAR520G0001 Trochodendron aralioides HOM05D007384 ORTHO05D008511 2.6e-09 66.2 172 27.3
arahy.Tifrunner.gnm1.ann1.XNBA0B Arachis hypogaea HOM05D007384 ORTHO05D008511 4.4e-09 65.5 73 53.4
SalBow5G0260 Salvia bowleyana HOM05D007384 ORTHO05D008511 4.4e-09 65.5 162 27.2
Hund19659 Selenicereus undatus HOM05D007384 ORTHO05D008511 4.4e-09 65.5 166 30.1
Glyma.04G219700 Glycine max HOM05D007384 ORTHO05D008511 5.7e-09 65.1 93 41.9
Rhsim10G0013800 Rhododendron simsii HOM05D007384 ORTHO05D008511 5.7e-09 65.1 159 35.2
Sed0027168 Sechium edule HOM05D007384 ORTHO05D008511 5.7e-09 65.1 171 31.6
arahy.Tifrunner.gnm1.ann1.66AXK3 Arachis hypogaea HOM05D007384 ORTHO05D008511 9.8e-09 64.3 165 32.1
arahy.Tifrunner.gnm1.ann1.P053PK Arachis hypogaea HOM05D007384 ORTHO05D008511 9.8e-09 64.3 165 32.1
SalBow5G4202 Salvia bowleyana HOM05D007384 ORTHO05D008511 9.8e-09 64.3 159 27.0
Cfa002748 Carpinus fangiana HOM05D007384 ORTHO05D008511 2.2e-08 63.2 182 32.4
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 2.2e-08 63.2 166 31.3
Glyma.06G146100 Glycine max HOM05D007384 ORTHO05D008511 2.8e-08 62.8 90 46.7
Oeu028378.1 Olea europaea HOM05D007384 ORTHO05D008511 2.8e-08 62.8 162 34.6
Rhsim08G0006700 Rhododendron simsii HOM05D007384 ORTHO05D008511 2.8e-08 62.8 168 45.8
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 3.7e-08 62.4 165 34.5
TAR628G0188 Trochodendron aralioides HOM05D007384 ORTHO05D008511 3.7e-08 62.4 172 26.7
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 4.9e-08 62.0 172 29.1
arahy.Tifrunner.gnm1.ann1.3HN607 Arachis hypogaea HOM05D007384 ORTHO05D008511 4.9e-08 62.0 165 31.5
Oeu028376.1 Olea europaea HOM05D007384 ORTHO05D008511 4.9e-08 62.0 162 34.6
Hund03542 Selenicereus undatus HOM05D007384 ORTHO05D008511 4.9e-08 62.0 178 28.1
CsaV3_2G017570 Cucumis sativus L. HOM05D007384 ORTHO05D008511 6.3e-08 61.6 170 29.4
Gohir.A02G134800 Gossypium hirsutum HOM05D007384 ORTHO05D008511 6.3e-08 61.6 88 46.6
MSTRG.23314 Avicennia marina HOM05D007384 ORTHO05D008511 8.3e-08 61.2 158 29.1
Phvul.009G139900 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 8.3e-08 61.2 97 40.2
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 8.3e-08 61.2 164 34.8
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 1.1e-07 60.8 159 28.9
CSS0019294 Camellia sinensis var. sinensis HOM05D007384 ORTHO05D008511 3.1e-07 59.3 98 39.8
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 4.1e-07 58.9 165 27.9
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 7.0e-07 58.2 158 26.6
CiPaw.04G092400 Carya illinoinensis HOM05D007384 ORTHO05D008511 1.2e-06 57.4 181 33.1
Gohir.D10G101900 Gossypium hirsutum HOM05D007384 ORTHO05D008511 1.2e-06 57.4 67 50.7
VMungo1309G0400 Vigna mungo HOM05D007384 ORTHO05D008511 1.2e-06 57.4 97 38.1
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 2.7e-06 56.2 166 27.7
MSTRG.2538 Avicennia marina HOM05D007384 ORTHO05D008511 4.5e-06 55.5 161 42.9
THA.LOC104799256 Tarenaya hassleriana HOM05D012887 ORTHO05D008511 4.5e-06 55.5 167 35.9


User provided reference genes

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