Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 1.2e-98 363.2 193 100.0
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 8.5e-68 260.8 186 76.9
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 3.5e-61 238.8 194 66.0
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 7.7e-61 237.7 196 65.8
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 2.5e-59 232.6 201 66.7
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 9.4e-59 230.7 198 65.7
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 1.2e-58 230.3 203 64.5
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 2.1e-58 229.6 204 65.7
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 2.7e-58 229.2 204 65.2
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 3.6e-58 228.8 196 63.8
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 3.6e-58 228.8 207 62.3
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 4.7e-58 228.4 196 63.3
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 6.1e-58 228.0 194 63.9
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 8.0e-58 227.6 209 63.2
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 1.4e-57 226.9 196 62.8
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 1.4e-57 226.9 196 62.8
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 2.3e-57 226.1 196 62.2
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 2.3e-57 226.1 197 63.5
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 2.6e-56 222.6 204 65.2
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 3.3e-56 222.2 203 63.1
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 7.4e-56 221.1 198 64.1
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 2.2e-55 219.5 197 60.4
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 2.2e-55 219.5 195 62.1
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 3.7e-55 218.8 194 62.4
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 4.1e-54 215.3 198 60.6
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 7.0e-54 214.5 197 60.9
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 9.1e-54 214.2 195 62.1
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 1.6e-53 213.4 199 61.3
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 2.0e-53 213.0 208 60.1
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 2.6e-53 212.6 200 61.0
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 4.5e-53 211.8 197 58.9
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 4.5e-53 211.8 197 58.9
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 5.9e-53 211.5 196 61.7
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 5.9e-53 211.5 197 59.9
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 1.7e-52 209.9 193 60.1
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 2.2e-52 209.5 199 59.3
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 2.9e-52 209.1 196 62.2
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 3.2e-51 205.7 196 60.7
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 4.7e-50 201.8 208 56.2
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 4.7e-50 201.8 202 57.4
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 6.1e-50 201.4 203 58.1
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 6.1e-50 201.4 205 59.0
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 1.4e-49 200.3 189 60.3
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 1.4e-49 200.3 202 59.4
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 2.3e-49 199.5 204 58.3
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 2.3e-49 199.5 199 59.3
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 5.2e-49 198.4 205 58.5
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 6.8e-49 198.0 192 56.8
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 6.8e-49 198.0 201 57.2
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 1.5e-48 196.8 206 56.8
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.5e-48 196.8 202 58.9
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 1.5e-48 196.8 200 56.0
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 2.0e-48 196.4 204 56.4
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 4.4e-48 195.3 205 54.6
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 5.7e-48 194.9 207 55.6
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 5.7e-48 194.9 199 60.3
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 7.5e-48 194.5 201 56.7
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 1.3e-47 193.7 201 56.7
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 1.3e-47 193.7 193 58.5
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 2.2e-47 193.0 204 54.4
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 3.7e-47 192.2 197 56.9
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 6.3e-47 191.4 180 57.8
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 8.3e-47 191.0 202 55.9
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 1.8e-46 189.9 202 55.0
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 1.8e-46 189.9 202 55.0
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 1.8e-46 189.9 202 55.0
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 1.8e-46 189.9 202 55.9
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 1.8e-46 189.9 198 55.1
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 1.8e-46 189.9 198 55.1
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 2.4e-46 189.5 202 55.0
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 4.1e-46 188.7 202 54.5
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 5.3e-46 188.3 196 56.6
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 1.2e-45 187.2 190 58.9
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 2.7e-45 186.0 212 54.7
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 3.5e-45 185.7 201 58.7
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 4.5e-45 185.3 190 55.3
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 5.9e-45 184.9 208 52.9
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 1.3e-44 183.7 205 53.2
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 1.7e-44 183.3 204 52.9
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 2.2e-44 183.0 207 52.2
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 6.5e-44 181.4 171 59.1
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 8.5e-44 181.0 199 51.8
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 9.4e-43 177.6 149 58.4
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 1.6e-42 176.8 208 50.5
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 2.7e-42 176.0 194 54.1
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 2.7e-42 176.0 155 58.1
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 1.4e-41 173.7 202 52.0
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.8e-41 173.3 142 63.4
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 5.2e-41 171.8 208 50.0
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 1.3e-39 167.2 196 50.5
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 1.3e-39 167.2 203 50.7
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 2.2e-39 166.4 209 49.3
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 2.8e-39 166.0 211 48.3
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 3.7e-39 165.6 215 49.3
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 3.7e-39 165.6 210 47.1
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 1.4e-38 163.7 196 50.0
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 1.8e-38 163.3 147 57.1
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 3.5e-37 159.1 167 50.9
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 3.5e-37 159.1 149 57.0
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 1.0e-36 157.5 201 47.8
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 1.5e-35 153.7 138 57.2
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 4.4e-32 142.1 140 50.0
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 2.2e-23 113.2 93 61.3
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 1.1e-22 110.9 113 61.9
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 1.4e-22 110.5 184 42.4
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 4.7e-18 95.5 117 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 3.4e-16 89.4 155 34.8
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 2.9e-15 86.3 115 47.8
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 2.7e-13 79.7 155 31.6
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 6.0e-13 78.6 106 42.5
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 3.9e-12 75.9 141 30.5
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 8.6e-12 74.7 71 56.3
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 1.1e-11 74.3 137 35.0
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 9.5e-11 71.2 142 30.3
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 5.2e-09 65.5 165 30.3
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 8.9e-09 64.7 132 31.1


User provided reference genes

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