Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 6341.9 3210 100.0
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 5286.5 3255 83.5
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 5202.9 3248 82.4
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 5099.3 3249 80.9
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 5086.2 3249 80.6
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 5070.0 3249 80.4
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 5057.7 3249 80.3
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 5054.6 3250 80.2
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 4501.8 3243 72.5
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 4474.1 3259 71.8
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4348.5 3292 69.2
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 4281.9 3264 68.9
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 4263.8 3280 68.6
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4235.3 3263 68.0
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 4229.1 3275 67.8
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4214.8 3263 67.9
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 4173.2 3253 67.6
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4170.5 3260 67.0
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4164.4 3266 66.9
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 4137.4 3288 66.7
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4117.8 3276 66.4
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 4115.8 3312 66.0
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 4110.1 3257 66.5
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 4102.0 3251 66.4
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 4084.3 3250 66.3
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 4073.5 3260 66.1
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 4069.6 3259 65.7
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 4047.7 3253 65.7
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4029.9 3269 65.4
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4017.2 3269 65.3
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 4001.8 3235 65.3
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3955.2 3247 64.7
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3930.2 3249 63.9
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3924.4 3263 64.5
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3865.1 2886 69.7
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3857.0 3380 61.9
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3846.6 3266 62.1
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3845.4 3294 62.4
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3820.8 3266 61.8
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3806.1 3269 62.6
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3789.6 3265 63.0
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3774.9 3264 61.4
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3771.5 3272 61.4
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3630.9 3286 59.6
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3611.2 3291 59.6
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3609.7 3279 59.7
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3583.9 3307 58.8
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3582.7 2999 63.4
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3577.3 3245 60.0
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3570.8 3254 59.4
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3568.1 3247 59.5
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3557.7 3253 59.3
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3532.3 3261 59.2
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3521.5 3243 58.7
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3513.4 3244 58.7
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3510.3 3245 58.6
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3509.9 3243 58.7
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3501.1 3245 58.8
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3498.0 3265 58.1
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3489.1 3305 58.1
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3489.1 3254 58.3
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3486.8 3283 58.3
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3461.4 3256 58.4
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3447.9 3252 58.3
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3446.8 3116 59.4
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3435.6 3259 58.1
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3384.3 3279 57.0
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3370.5 3262 56.6
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3353.1 3249 57.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3295.4 3306 55.4
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 3285.0 3259 56.4
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3202.9 2701 62.8
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3090.4 2433 66.2
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3040.4 3103 55.1
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 3030.0 2019 77.4
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2956.4 3020 55.3
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2791.1 3134 51.3
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2747.6 3264 48.9
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2530.0 2460 55.2
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2409.0 1600 78.1
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2311.2 2579 51.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2268.8 1691 69.9
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2227.6 2007 59.5
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2172.9 2417 50.6
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2148.6 3214 41.6
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2107.8 2433 49.4
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2074.7 1507 71.9
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 2041.5 1796 62.6
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2038.8 1468 71.9
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 2028.4 2825 43.6
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1994.2 1446 73.2
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1956.4 3311 38.3
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1923.7 3482 37.2
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1892.5 3513 37.1
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1647.9 1004 83.9
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1536.9 1244 64.1
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1504.2 2170 42.7
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1468.0 1750 47.1
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1426.0 969 75.6
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1422.1 1502 53.9
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1387.9 1536 51.1
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1266.5 1553 48.7
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1256.1 998 66.3
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1242.6 1467 47.8
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1202.2 844 73.0
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1148.7 835 71.1
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1129.0 1135 57.4
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.0e-307 1060.8 943 61.3
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.4e-302 1043.1 852 63.5
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.8e-298 1030.0 890 61.3
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 8.3e-293 1012.3 3379 27.8
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.1e-284 985.3 749 66.4
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 3.6e-272 943.7 1305 44.4
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 4.5e-246 857.1 821 57.0
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.3e-218 765.8 821 52.4
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 2.9e-205 721.5 411 89.1
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.2e-203 716.1 851 48.6
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.6e-203 715.7 441 80.7
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.4e-199 701.8 929 46.5
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 6.8e-170 604.0 824 45.8
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 5.1e-149 534.6 409 68.2
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.3e-144 520.0 658 45.4
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 3.1e-138 498.8 821 37.5
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 9.0e-138 497.3 463 56.2
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 2.9e-136 492.3 806 39.8
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.8e-131 474.9 327 72.2
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 4.2e-127 461.8 894 36.5
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.9e-124 453.0 604 47.5
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 4.3e-124 451.8 270 81.1
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 8.1e-123 447.6 250 88.0
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.2e-121 443.7 578 48.3
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 2.4e-114 419.5 342 65.2
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 3.9e-109 402.1 301 68.4
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 4.1e-106 392.1 414 53.4
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 8.8e-101 374.4 645 38.0
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 2.0e-97 363.2 834 31.4
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 3.4e-97 362.5 217 85.3
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 7.7e-97 361.3 247 70.9
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 2.5e-95 356.3 535 40.9
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-92 347.4 244 68.9
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 2.2e-91 343.2 351 54.7
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.9e-85 322.4 307 57.7
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 3.7e-83 315.8 792 31.4
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.9e-80 306.2 956 27.5
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-76 293.5 325 49.2
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 7.0e-74 285.0 298 53.7
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.8e-72 279.3 680 30.7
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 2.5e-63 250.0 155 80.6
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 7.2e-63 248.4 410 41.0
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.9e-55 223.8 708 28.7
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 3.4e-52 213.0 402 36.8
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 6.0e-49 202.2 194 55.2
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 8.9e-37 161.8 118 70.3
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 4.7e-30 139.4 82 82.9
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 1.1e-29 138.3 119 63.0
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 9.9e-28 131.7 97 70.1
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 2.2e-27 130.6 111 67.6
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.4e-26 127.9 115 64.3
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.4e-26 127.9 111 55.9
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 7.8e-25 122.1 108 65.7
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 8.7e-24 118.6 109 59.6
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.9e-23 117.5 86 68.6
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 9.6e-23 115.2 70 84.3
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.4e-18 100.5 93 51.6
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 8.7e-16 92.0 153 35.3
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 5.6e-15 89.4 60 68.3
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-11 78.2 56 73.2
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 8.4e-11 75.5 64 56.2
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 2.4e-10 73.9 59 57.6
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 9.3e-10 72.0 59 59.3
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 6.0e-09 69.3 45 75.6
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 1.3e-08 68.2 98 43.9


User provided reference genes

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