Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.6e-98 363.2 262 100.0
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 2.6e-27 126.7 386 43.5
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.4e-20 103.6 155 43.9
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 5.2e-20 102.4 155 43.9
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 5.2e-20 102.4 153 43.1
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.5e-19 100.9 153 42.5
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.5e-19 100.9 163 42.9
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 2.0e-19 100.5 153 42.5
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 7.6e-19 98.6 154 42.2
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 7.6e-19 98.6 154 42.2
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 3.8e-18 96.3 153 42.5
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 3.8e-18 96.3 156 41.7
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 8.4e-18 95.1 156 41.7
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.1e-17 94.7 361 34.6
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.1e-17 94.7 153 43.1
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.4e-17 94.4 159 40.3
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.4e-17 94.4 151 42.4
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.4e-17 94.4 151 42.4
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.4e-17 94.4 151 42.4
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.4e-17 94.4 151 42.4
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.4e-17 94.4 122 45.9
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.4e-17 94.4 156 40.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 3.2e-17 93.2 210 34.8
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 3.2e-17 93.2 56 83.9
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.2e-17 92.8 147 42.9
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 7.1e-17 92.0 56 82.1
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 7.1e-17 92.0 56 82.1
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 7.1e-17 92.0 56 82.1
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 7.1e-17 92.0 148 41.9
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 7.1e-17 92.0 56 82.1
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 9.3e-17 91.7 56 82.1
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.2e-16 91.3 56 82.1
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.6e-16 90.9 56 82.1
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.6e-16 90.9 55 83.6
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.6e-16 90.9 55 83.6
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.6e-16 90.9 55 83.6
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.6e-16 90.9 56 82.1
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.6e-16 90.9 55 83.6
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.6e-16 90.9 56 82.1
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.6e-16 90.9 56 82.1
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.1e-16 90.5 56 80.4
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.1e-16 90.5 56 80.4
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 2.7e-16 90.1 56 82.1
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 3.5e-16 89.7 55 81.8
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.5e-16 89.7 148 41.9
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.5e-16 89.7 56 82.1
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.0e-16 89.0 56 78.6
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 6.0e-16 89.0 55 81.8
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 6.0e-16 89.0 55 81.8
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.0e-15 88.2 55 81.8
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.3e-15 87.8 56 80.4
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.3e-15 87.8 56 80.4
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.3e-15 87.8 56 80.4
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.7e-15 87.4 56 78.6
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.3e-15 87.0 56 78.6
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.3e-15 87.0 56 78.6
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 2.3e-15 87.0 56 78.6
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.3e-15 87.0 56 78.6
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.3e-15 87.0 56 78.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 2.3e-15 87.0 56 78.6
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.3e-15 87.0 56 78.6
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.3e-15 87.0 56 78.6
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.0e-15 86.7 56 76.8
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 3.9e-15 86.3 55 80.0
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 5.1e-15 85.9 56 76.8
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 5.1e-15 85.9 56 76.8
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 5.1e-15 85.9 56 76.8
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 5.1e-15 85.9 56 76.8
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 8.7e-15 85.1 56 76.8
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 8.7e-15 85.1 56 76.8
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 8.7e-15 85.1 56 76.8
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 8.7e-15 85.1 56 76.8
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 8.7e-15 85.1 56 76.8
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 8.7e-15 85.1 56 76.8
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 8.7e-15 85.1 56 76.8
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.1e-14 84.7 54 79.6
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.1e-14 84.7 56 76.8
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.1e-14 84.7 56 76.8
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.1e-14 84.7 56 76.8
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 1.1e-14 84.7 54 79.6
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 1.1e-14 84.7 54 79.6
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 1.1e-14 84.7 54 79.6
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.1e-14 84.7 56 76.8
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.5e-14 84.3 57 73.7
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.5e-14 84.3 56 75.0
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.5e-14 84.3 56 75.0
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.9e-14 84.0 52 82.7
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.9e-14 84.0 55 78.2
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.9e-14 84.0 52 82.7
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 3.3e-14 83.2 55 76.4
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 3.3e-14 83.2 55 76.4
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 3.3e-14 83.2 54 77.8
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 7.3e-14 82.0 55 78.2
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 7.3e-14 82.0 55 74.5
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.3e-13 81.3 55 76.4
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.3e-13 81.3 55 74.5
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.3e-13 81.3 55 76.4
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.3e-13 81.3 55 76.4
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 2.1e-13 80.5 57 75.4
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 76.4
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 2.8e-13 80.1 55 72.7
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 6.2e-13 79.0 56 71.4
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 8.1e-13 78.6 55 70.9
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 8.1e-13 78.6 55 72.7
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.4e-12 77.8 116 40.5
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-12 77.8 53 73.6
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-12 77.8 55 70.9
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-12 77.8 54 72.2
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-12 77.8 54 72.2
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-12 77.8 53 73.6
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.4e-12 77.8 55 70.9
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-12 77.4 55 70.9
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-11 74.7 55 69.1
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-11 74.7 55 69.1
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 1.2e-11 74.7 118 39.8
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 5.8e-11 72.4 55 65.5
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 7.6e-11 72.0 59 66.1
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.7e-10 70.9 55 63.6
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 2.9e-10 70.1 52 71.2
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 3.8e-10 69.7 54 68.5
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 6.4e-10 68.9 141 36.9
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 3.2e-09 66.6 49 67.3
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.4e-09 65.9 41 78.0
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 5.4e-09 65.9 38 86.8
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 9.3e-09 65.1 58 58.6
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 1.3e-07 61.2 45 66.7
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 9.6e-06 55.1 46 52.2


User provided reference genes

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