Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G166000 Prunus persica HOM05D015647 ORTHO05D009732 1.5e-40 169.1 85 100.0
MD15G1335300 Malus domestica HOM05D015647 ORTHO05D009732 6.7e-25 117.1 90 75.6
MD01G1015700 Malus domestica HOM05D008370 ORTHO05D009732 6.5e-20 100.5 85 64.7
RcHm_v2.0_Chr2g0118101 Rosa chinensis HOM05D015647 ORTHO05D009732 2.8e-15 85.1 85 61.2
FAN26G2287 Fragaria x ananassa HOM05D015647 ORTHO05D009732 1.4e-14 82.8 84 58.3
FAN28G0316 Fragaria x ananassa HOM05D015647 ORTHO05D009732 3.1e-14 81.6 84 57.1
FAN23G0974 Fragaria x ananassa HOM05D015647 ORTHO05D009732 1.2e-13 79.7 86 57.0
FvH4_1g23250 Fragaria vesca HOM05D015647 ORTHO05D009732 2.0e-13 79.0 86 57.0
FAN19G0574 Fragaria x ananassa HOM05D015647 ORTHO05D009732 2.0e-13 79.0 86 57.0
Atru.chr4.716 Acer truncatum HOM05D008370 ORTHO05D009732 8.5e-12 73.6 88 48.9
Lj1g0003311 Lotus japonicus HOM05D008370 ORTHO05D009732 7.2e-11 70.5 89 51.7
QL06p031379 Quercus lobata HOM05D008370 ORTHO05D009732 1.6e-10 69.3 79 50.6
Actinidia01380 Actinidia chinensis HOM05D008370 ORTHO05D009732 4.6e-10 67.8 85 50.6
CiPaw.04G088900 Carya illinoinensis HOM05D008370 ORTHO05D009732 6.1e-10 67.4 79 51.9
Gohir.D03G047500 Gossypium hirsutum HOM05D008370 ORTHO05D009732 7.9e-10 67.0 85 47.1
arahy.Tifrunner.gnm1.ann1.G5B6SC Arachis hypogaea HOM05D008370 ORTHO05D009732 2.3e-09 65.5 85 48.2
Actinidia12221 Actinidia chinensis HOM05D008370 ORTHO05D009732 3.9e-09 64.7 85 50.6
Manes.13G080360 Manihot esculenta HOM05D008370 ORTHO05D009732 3.9e-09 64.7 85 50.6
Gorai.003G048600 Gossypium raimondii HOM05D008370 ORTHO05D009732 5.1e-09 64.3 85 45.9
Thecc.01G117100 Theobroma cacao HOM05D008370 ORTHO05D009732 5.1e-09 64.3 85 48.2
COL.COLO4_22370 Corchorus olitorius HOM05D008370 ORTHO05D009732 6.7e-09 63.9 86 47.7
Lj4g0015780 Lotus japonicus HOM05D008370 ORTHO05D009732 6.7e-09 63.9 85 45.9
arahy.Tifrunner.gnm1.ann1.R1SWRL Arachis hypogaea HOM05D010746 ORTHO05D009732 8.8e-09 63.5 91 46.2
arahy.Tifrunner.gnm1.ann1.U48W6H Arachis hypogaea HOM05D008370 ORTHO05D009732 8.8e-09 63.5 88 48.9
QL06p031372 Quercus lobata HOM05D008370 ORTHO05D009732 8.8e-09 63.5 84 50.0
TPR.G2226 Trifolium pratense HOM05D008370 ORTHO05D009732 8.8e-09 63.5 87 46.0
Dinv05773 Davidia involucrata HOM05D008370 ORTHO05D009732 1.1e-08 63.2 86 51.2
Gorai.002G039200 Gossypium raimondii HOM05D008370 ORTHO05D009732 1.5e-08 62.8 86 45.3
arahy.Tifrunner.gnm1.ann1.Z046N5 Arachis hypogaea HOM05D010746 ORTHO05D009732 1.9e-08 62.4 89 43.8
Psat7g050120 Pisum sativum HOM05D010746 ORTHO05D009732 1.9e-08 62.4 86 48.8
Rhsim08G0004800 Rhododendron simsii HOM05D008370 ORTHO05D009732 1.9e-08 62.4 87 48.3
Gohir.A01G042000 Gossypium hirsutum HOM05D008370 ORTHO05D009732 2.5e-08 62.0 86 44.2
Cfa002786 Carpinus fangiana HOM05D008370 ORTHO05D009732 3.3e-08 61.6 79 50.6
Haze_25084 Corylus avellana HOM05D008370 ORTHO05D009732 3.3e-08 61.6 79 50.6
Eucgr.I00294 Eucalyptus grandis HOM05D008370 ORTHO05D009732 3.3e-08 61.6 84 50.0
COL.COLO4_17423 Corchorus olitorius HOM05D008370 ORTHO05D009732 4.3e-08 61.2 85 47.1
arahy.Tifrunner.gnm1.ann1.Q4N452 Arachis hypogaea HOM05D010746 ORTHO05D009732 5.7e-08 60.8 91 45.1
Glyma.05G186300 Glycine max HOM05D008370 ORTHO05D009732 5.7e-08 60.8 85 50.6
Sed0018859 Sechium edule HOM05D029062 ORTHO05D009732 5.7e-08 60.8 87 42.5
Glyma.08G144800 Glycine max HOM05D008370 ORTHO05D009732 9.7e-08 60.1 81 50.6
Sabra07G0065300 Salix brachista HOM05D008370 ORTHO05D009732 9.7e-08 60.1 85 45.9
arahy.Tifrunner.gnm1.ann1.4A1U07 Arachis hypogaea HOM05D010746 ORTHO05D009732 1.3e-07 59.7 93 40.9
Psat7g050080 Pisum sativum HOM05D008370 ORTHO05D009732 1.3e-07 59.7 87 43.7
Potri.007G077300 Populus trichocarpa HOM05D008370 ORTHO05D009732 1.3e-07 59.7 85 48.2
CiPaw.04G088800 Carya illinoinensis HOM05D008370 ORTHO05D009732 1.7e-07 59.3 82 42.7
Manes.12G145500 Manihot esculenta HOM05D008370 ORTHO05D009732 1.7e-07 59.3 85 43.5
CiPaw.03G131600 Carya illinoinensis HOM05D008370 ORTHO05D009732 2.2e-07 58.9 77 50.6
Ciclev10026869m.g Citrus clementina HOM05D008370 ORTHO05D009732 2.2e-07 58.9 85 45.9
TPR.G2215 Trifolium pratense HOM05D010746 ORTHO05D009732 2.2e-07 58.9 82 50.0
Cfa002787 Carpinus fangiana HOM05D008370 ORTHO05D009732 2.8e-07 58.5 86 46.5
ClCG02G000910 Citrullus lanatus HOM05D029062 ORTHO05D034721 2.8e-07 58.5 88 44.3
CSS0039971 Camellia sinensis var. sinensis HOM05D008370 ORTHO05D009732 3.7e-07 58.2 86 50.0
Gohir.D01G030000 Gossypium hirsutum HOM05D008370 ORTHO05D009732 3.7e-07 58.2 86 45.3
Gohir.A02G136703 Gossypium hirsutum HOM05D008370 ORTHO05D009732 4.8e-07 57.8 89 44.9
Lalb_Chr12g0203401 Lupinus albus HOM05D010746 ORTHO05D009732 4.8e-07 57.8 87 44.8
Potri.005G087000 Populus trichocarpa HOM05D008370 ORTHO05D009732 4.8e-07 57.8 92 43.5
Lj4g0014601 Lotus japonicus HOM05D010746 ORTHO05D009732 8.2e-07 57.0 84 45.2
Glyma.05G186400 Glycine max HOM05D010746 ORTHO05D009732 1.8e-06 55.8 86 43.0
Thecc.07G145600 Theobroma cacao HOM05D008370 ORTHO05D009732 1.8e-06 55.8 85 42.4
Duzib187G1656 Durio zibethinus HOM05D008370 ORTHO05D009732 3.1e-06 55.1 86 44.2
Glyma.04G217800 Glycine max HOM05D008370 ORTHO05D009732 3.1e-06 55.1 86 46.5
Phvul.009G138200 Phaseolus vulgaris HOM05D008370 ORTHO05D009732 3.1e-06 55.1 86 44.2
Medtr8g092320 Medicago truncatula HOM05D008370 ORTHO05D009732 5.3e-06 54.3 86 41.9
CsaV3_2G017800 Cucumis sativus L. HOM05D029062 ORTHO05D034721 9.1e-06 53.5 89 38.2
Glyma.06G148100 Glycine max HOM05D008370 ORTHO05D009732 9.1e-06 53.5 87 43.7
Medtr8g092340 Medicago truncatula HOM05D010746 ORTHO05D009732 9.1e-06 53.5 85 41.2


User provided reference genes

Program Settings