Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G192200 Prunus persica HOM05D000410 ORTHO05D002963 4.7e-79 297.7 144 100.0
Prupe.6G165200 Prunus persica HOM05D000410 ORTHO05D002963 4.7e-79 297.7 144 100.0
Prupe.7G181900 Prunus persica HOM05D000410 ORTHO05D002963 4.7e-79 297.7 144 100.0
Prupe.8G197800 Prunus persica HOM05D000410 ORTHO05D002963 4.7e-79 297.7 144 100.0
Prupe.5G050300 Prunus persica HOM05D000410 ORTHO05D002963 5.6e-48 194.5 115 87.0
FAN08G2615 Fragaria x ananassa HOM05D000410 ORTHO05D002963 1.6e-39 166.4 115 78.3
FAN18G0369 Fragaria x ananassa HOM05D000410 ORTHO05D002963 1.6e-39 166.4 115 78.3
FAN13G1868 Fragaria x ananassa HOM05D000410 ORTHO05D002963 6.8e-38 161.0 115 76.5
FAN04G2418 Fragaria x ananassa HOM05D000410 ORTHO05D002963 2.0e-37 159.5 115 75.7
RcHm_v2.0_Chr7g0207871 Rosa chinensis HOM05D000410 ORTHO05D002963 7.1e-35 151.0 116 72.4
QL12p007792 Quercus lobata HOM05D000410 ORTHO05D002963 3.3e-32 142.1 118 70.3
Manes.17G020100 Manihot esculenta HOM05D000410 ORTHO05D002963 1.2e-29 133.7 128 60.9
FvH4_3g23840 Fragaria vesca HOM05D000410 ORTHO05D002963 4.4e-29 131.7 108 70.4
FAN11G3527 Fragaria x ananassa HOM05D000410 ORTHO05D002963 4.4e-29 131.7 108 70.4
Manes.15G171500 Manihot esculenta HOM05D000410 ORTHO05D002963 5.8e-29 131.3 128 60.9
CiPaw.12G058700 Carya illinoinensis HOM05D000410 ORTHO05D002963 3.8e-28 128.6 118 65.3
MD06G1043600 Malus domestica HOM05D000410 ORTHO05D002963 8.4e-28 127.5 116 63.8
ClCG09G012480 Citrullus lanatus HOM05D000410 ORTHO05D002963 5.4e-27 124.8 115 61.7
CANSAT21G1942 Cannabis sativa HOM05D000410 ORTHO05D002963 9.2e-27 124.0 119 64.7
MELO3C003360.2 Cucumis melo HOM05D000410 ORTHO05D002963 2.1e-26 122.9 115 61.7
Haze_08322 Corylus avellana HOM05D000410 ORTHO05D002963 3.5e-26 122.1 118 63.6
CsaV3_3G049650 Cucumis sativus L. HOM05D000410 ORTHO05D002963 3.5e-26 122.1 115 61.7
Cfa012361 Carpinus fangiana HOM05D000410 ORTHO05D002963 1.3e-25 120.2 118 64.4
Gorai.004G190300 Gossypium raimondii HOM05D000410 ORTHO05D002963 1.3e-25 120.2 116 60.3
Gohir.D08G181300 Gossypium hirsutum HOM05D000410 ORTHO05D002963 1.7e-25 119.8 116 60.3
Thecc.03G236500 Theobroma cacao HOM05D000410 ORTHO05D002963 3.0e-25 119.0 118 60.2
Sed0020068 Sechium edule HOM05D000410 ORTHO05D002963 5.1e-25 118.2 115 59.1
TWI81G0043 Tripterygium wilfordii HOM05D000410 ORTHO05D002963 5.1e-25 118.2 116 60.3
Glyma.11G039700 Glycine max HOM05D000410 ORTHO05D002963 6.6e-25 117.9 119 64.7
TWI60G0489 Tripterygium wilfordii HOM05D000410 ORTHO05D002963 6.6e-25 117.9 116 59.5
Dinv28900 Davidia involucrata HOM05D000410 ORTHO05D002963 1.5e-24 116.7 124 59.7
Glyma.01G203300 Glycine max HOM05D000410 ORTHO05D002963 1.9e-24 116.3 119 63.0
PGR042G2973 Punica granatum HOM05D000410 ORTHO05D002963 5.6e-24 114.8 117 60.7
Gohir.A08G161400 Gossypium hirsutum HOM05D000410 ORTHO05D002963 7.3e-24 114.4 116 57.8
Nitab4.5_0007226g0020 Nicotiana tabacum HOM05D000410 ORTHO05D002963 1.2e-23 113.6 126 55.6
CSS0004938 Camellia sinensis var. sinensis HOM05D000410 ORTHO05D002963 2.8e-23 112.5 123 58.5
COL.COLO4_06707 Corchorus olitorius HOM05D000410 ORTHO05D002963 2.8e-23 112.5 121 58.7
Hma1.2p1_0311F.1_g121150 Hydrangea macrophylla HOM05D000410 ORTHO05D002963 3.6e-23 112.1 125 57.6
Duzib068G0858 Durio zibethinus HOM05D000410 ORTHO05D002963 8.1e-23 110.9 116 59.5
Potri.001G148600 Populus trichocarpa HOM05D000410 ORTHO05D002963 8.1e-23 110.9 120 55.8
TAR636G3151 Trochodendron aralioides HOM05D000410 ORTHO05D002963 8.1e-23 110.9 120 59.2
Nitab4.5_0001708g0030 Nicotiana tabacum HOM05D000410 ORTHO05D002963 1.1e-22 110.5 125 55.2
CsaV3_3G002110 Cucumis sativus L. HOM05D000410 ORTHO05D002963 1.4e-22 110.2 120 59.2
GSVIVG01013266001 Vitis vinifera HOM05D000410 ORTHO05D002963 1.8e-22 109.8 116 59.5
Solyc08g077460.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 5.2e-22 108.2 125 55.2
Sopen08g026050 Solanum pennellii HOM05D000410 ORTHO05D002963 5.2e-22 108.2 125 55.2
PGSC0003DMG400001841 Solanum tuberosum HOM05D000410 ORTHO05D002963 5.2e-22 108.2 127 53.5
Actinidia03400 Actinidia chinensis HOM05D000410 ORTHO05D002963 6.9e-22 107.8 122 59.0
Sed0015081 Sechium edule HOM05D000410 ORTHO05D002963 9.0e-22 107.5 113 60.2
Gohir.A11G029600 Gossypium hirsutum HOM05D000410 ORTHO05D002963 1.5e-21 106.7 118 59.3
Ciclev10020548m.g Citrus clementina HOM05D000410 ORTHO05D002963 2.0e-21 106.3 150 46.7
Nn1g00692 Nelumbo nucifera HOM05D000410 ORTHO05D002963 5.8e-21 104.8 120 54.2
CiPaw.11G085800 Carya illinoinensis HOM05D000410 ORTHO05D002963 7.6e-21 104.4 115 53.9
TAR374G1463 Trochodendron aralioides HOM05D000410 ORTHO05D002963 7.6e-21 104.4 118 55.1
Sed0019352 Sechium edule HOM05D000410 ORTHO05D002963 9.9e-21 104.0 116 56.9
Gorai.008G229800 Gossypium raimondii HOM05D000410 ORTHO05D002963 2.2e-20 102.8 116 55.2
Eucgr.E00327 Eucalyptus grandis HOM05D000410 ORTHO05D002963 6.4e-20 101.3 113 52.2
Eucgr.D02146 Eucalyptus grandis HOM05D000410 ORTHO05D002963 1.1e-19 100.5 127 52.8
Gohir.D11G028100 Gossypium hirsutum HOM05D000410 ORTHO05D002963 1.1e-19 100.5 118 55.9
Lj2g0008503 Lotus japonicus HOM05D000410 ORTHO05D002963 1.1e-19 100.5 118 52.5
Gohir.A03G003100 Gossypium hirsutum HOM05D000410 ORTHO05D002963 5.4e-19 98.2 126 53.2
FAN07G0963 Fragaria x ananassa HOM05D000410 ORTHO05D002963 9.3e-19 97.4 130 50.8
Hma1.2p1_0414F.1_g147550 Hydrangea macrophylla HOM05D000410 ORTHO05D002963 9.3e-19 97.4 127 51.2
FvH4_5g20850 Fragaria vesca HOM05D000410 ORTHO05D002963 1.6e-18 96.7 77 71.4
Gohir.A12G211700 Gossypium hirsutum HOM05D000410 ORTHO05D002963 2.1e-18 96.3 116 54.3
Gorai.007G030800 Gossypium raimondii HOM05D000410 ORTHO05D002963 2.1e-18 96.3 118 54.2
Lalb_Chr05g0214161 Lupinus albus HOM05D000410 ORTHO05D002963 3.5e-18 95.5 121 55.4
Duzib205G1992 Durio zibethinus HOM05D000410 ORTHO05D002963 4.6e-18 95.1 119 53.8
Phvul.002G002700 Phaseolus vulgaris HOM05D000410 ORTHO05D002963 4.6e-18 95.1 120 55.8
Gohir.D12G214200 Gossypium hirsutum HOM05D000410 ORTHO05D002963 2.3e-17 92.8 116 53.4
Lj4g0007315 Lotus japonicus HOM05D000410 ORTHO05D002963 2.3e-17 92.8 124 54.0
THA.LOC104814702 Tarenaya hassleriana HOM05D000410 ORTHO05D002963 3.0e-17 92.4 120 49.2
Lalb_Chr09g0329641 Lupinus albus HOM05D000410 ORTHO05D002963 3.9e-17 92.0 118 53.4
Peaxi162Scf00084g00027 Petunia axillaris HOM05D000410 ORTHO05D002963 6.6e-17 91.3 129 50.4
Glyma.05G068400 Glycine max HOM05D000410 ORTHO05D002963 8.7e-17 90.9 127 52.8
PSO782G0633 Papaver somniferum HOM05D000410 ORTHO05D002963 8.7e-17 90.9 124 48.4
Lalb_Chr09g0324001 Lupinus albus HOM05D000410 ORTHO05D002963 1.5e-16 90.1 118 54.2
Peaxi162Scf00102g00731 Petunia axillaris HOM05D000410 ORTHO05D002963 1.5e-16 90.1 126 50.0
DCAR_008308 Daucus carota HOM05D000410 ORTHO05D002963 3.3e-16 89.0 120 48.3
Lalb_Chr05g0220741 Lupinus albus HOM05D000410 ORTHO05D002963 3.3e-16 89.0 118 55.1
ClCG10G002020 Citrullus lanatus HOM05D000410 ORTHO05D002963 4.3e-16 88.6 122 53.3
Nitab4.5_0000185g0300 Nicotiana tabacum HOM05D000410 ORTHO05D002963 5.6e-16 88.2 126 51.6
VMungo1215G2465 Vigna mungo HOM05D000410 ORTHO05D002963 5.6e-16 88.2 120 54.2
Gohir.D03G169300 Gossypium hirsutum HOM05D000410 ORTHO05D002963 9.6e-16 87.4 126 50.0
PSO063G3541 Papaver somniferum HOM05D000410 ORTHO05D002963 9.6e-16 87.4 127 48.0
Potri.003G085800 Populus trichocarpa HOM05D000410 ORTHO05D002963 1.6e-15 86.7 118 50.8
EL10Ac5g12214 Beta vulgaris HOM05D000410 ORTHO05D002963 2.8e-15 85.9 122 47.5
PGSC0003DMG400026593 Solanum tuberosum HOM05D000410 ORTHO05D002963 6.2e-15 84.7 123 50.4
FAN07G2141 Fragaria x ananassa HOM05D000410 ORTHO05D002963 8.1e-15 84.3 46 89.1
MELO3C013883.2 Cucumis melo HOM05D000410 ORTHO05D002963 1.1e-14 84.0 126 48.4
FvH4_5g16050 Fragaria vesca HOM05D000410 ORTHO05D002963 1.4e-14 83.6 46 89.1
Sopen06g021170 Solanum pennellii HOM05D000410 ORTHO05D002963 1.8e-14 83.2 123 50.4
Solyc06g061020.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 2.4e-14 82.8 123 50.4
THA.LOC104806686 Tarenaya hassleriana HOM05D000410 ORTHO05D002963 5.3e-14 81.6 116 47.4
Aa31LG9G15200 Aethionema arabicum HOM05D000410 ORTHO05D002963 6.9e-14 81.3 120 50.0
Medtr5g013690 Medicago truncatula HOM05D000410 ORTHO05D002963 1.2e-13 80.5 119 49.6
Peaxi162Scf00190g00029 Petunia axillaris HOM05D000410 ORTHO05D002963 1.5e-13 80.1 124 46.8
Nitab4.5_0000506g0240 Nicotiana tabacum HOM05D000410 ORTHO05D002963 2.0e-13 79.7 123 47.2
TPR.G33935 Trifolium pratense HOM05D000410 ORTHO05D002963 4.5e-13 78.6 116 47.4
TAR375G0421 Trochodendron aralioides HOM05D000410 ORTHO05D002963 4.5e-13 78.6 93 55.9
Glyma.17G150900 Glycine max HOM05D000410 ORTHO05D002963 5.8e-13 78.2 133 47.4
Hund14452 Selenicereus undatus HOM05D000410 ORTHO05D002963 7.6e-13 77.8 146 43.2
Ah.07g199690 Amaranthus hybridus HOM05D000410 ORTHO05D002963 9.9e-13 77.4 123 45.5
Psat2g174360 Pisum sativum HOM05D000410 ORTHO05D002963 9.9e-13 77.4 118 50.8
Ah.12g053780 Amaranthus hybridus HOM05D000410 ORTHO05D002963 2.2e-12 76.3 124 43.5
AL1G47020 Arabidopsis lyrata HOM05D000410 ORTHO05D002963 6.4e-12 74.7 118 46.6
Gorai.003G179400 Gossypium raimondii HOM05D000410 ORTHO05D002963 1.1e-11 73.9 123 45.5
Cc08_g01570 Coffea canephora HOM05D000410 ORTHO05D002963 1.4e-11 73.6 138 42.0
PGR031G3665 Punica granatum HOM05D000410 ORTHO05D002963 4.2e-11 72.0 131 45.0
Carub.0001s3107 Capsella rubella HOM05D000410 ORTHO05D002963 5.4e-11 71.6 119 45.4
Lalb_Chr16g0386211 Lupinus albus HOM05D000410 ORTHO05D002963 9.3e-11 70.9 114 47.4
Psat4g077520 Pisum sativum HOM05D000410 ORTHO05D002963 1.2e-10 70.5 112 48.2
Sp1g28230 Schrenkiella parvula HOM05D000410 ORTHO05D002963 1.2e-10 70.5 119 46.2
Nitab4.5_0009819g0010 Nicotiana tabacum HOM05D000410 ORTHO05D002963 2.7e-10 69.3 122 41.8
arahy.Tifrunner.gnm1.ann1.I1CICT Arachis hypogaea HOM05D000410 ORTHO05D002963 3.5e-10 68.9 123 48.0
CARHR224400 Cardamine hirsuta HOM05D000410 ORTHO05D002963 4.6e-10 68.6 116 42.2
TPR.G19186 Trifolium pratense HOM05D000410 ORTHO05D002963 4.6e-10 68.6 131 42.7
Actinidia34403 Actinidia chinensis HOM05D000410 ORTHO05D002963 6.0e-10 68.2 62 61.3
Medtr4g099060 Medicago truncatula HOM05D000410 ORTHO05D002963 1.3e-09 67.0 125 49.6
Hund11297 Selenicereus undatus HOM05D000410 ORTHO05D002963 5.1e-09 65.1 133 40.6
Actinidia10871 Actinidia chinensis HOM05D000410 ORTHO05D002963 6.7e-09 64.7 122 39.3
Actinidia34414 Actinidia chinensis HOM05D060695 ORTHO05D002963 8.7e-09 64.3 62 59.7
Actinidia23304 Actinidia chinensis HOM05D000410 ORTHO05D002963 1.1e-08 63.9 52 65.4
Solyc08g007120.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 1.9e-08 63.2 132 43.2
AL7G36910 Arabidopsis lyrata HOM05D000410 ORTHO05D002963 2.5e-08 62.8 114 42.1
Sp7g16460 Schrenkiella parvula HOM05D000410 ORTHO05D002963 2.5e-08 62.8 113 38.9
Phvul.003G227200 Phaseolus vulgaris HOM05D000410 ORTHO05D002963 3.3e-08 62.4 124 42.7
ATR0829G036 Amborella trichopoda HOM05D000410 ORTHO05D002963 5.6e-08 61.6 128 40.6
Thhalv10008231m.g Eutrema salsugineum HOM05D000410 ORTHO05D002963 7.4e-08 61.2 118 42.4
BcaNung04044 Brassica carinata HOM05D000410 ORTHO05D002963 9.6e-08 60.8 116 40.5
Sp2g11860 Schrenkiella parvula HOM05D000410 ORTHO05D002963 2.1e-07 59.7 118 38.1
CARHR174420 Cardamine hirsuta HOM05D000410 ORTHO05D002963 2.8e-07 59.3 114 37.7
VMungo0251G2888 Vigna mungo HOM05D000410 ORTHO05D002963 3.7e-07 58.9 129 41.9
BcaC06g33572 Brassica carinata HOM05D000410 ORTHO05D002963 4.8e-07 58.5 113 36.3
C07p48930 Brassica napus HOM05D000410 ORTHO05D002963 4.8e-07 58.5 113 36.3
BolC7t45401H Brassica oleracea HOM05D000410 ORTHO05D002963 4.8e-07 58.5 113 36.3
PGSC0003DMG400020510 Solanum tuberosum HOM05D000410 ORTHO05D002963 4.8e-07 58.5 139 36.7
SHI07578 Sapria himalayana HOM05D000410 ORTHO05D002963 6.2e-07 58.2 43 62.8
Lsat_1_v5_gn_6_89121 Lactuca sativa HOM05D000410 ORTHO05D002963 1.1e-06 57.4 128 39.1
Sc01g0007850 Simmondsia chinensis HOM05D000410 ORTHO05D002963 1.4e-06 57.0 130 39.2
Thhalv10000973m.g Eutrema salsugineum HOM05D000410 ORTHO05D002963 1.8e-06 56.6 118 38.1
Carub.0008s0077 Capsella rubella HOM05D000410 ORTHO05D002963 4.0e-06 55.5 115 38.3
CDE12G0441 Ceratophyllum demersum HOM05D000410 ORTHO05D002963 4.0e-06 55.5 116 37.9
Sabra03G0055700 Salix brachista HOM05D000410 ORTHO05D002963 4.0e-06 55.5 85 41.2
Aa31LG9G5930 Aethionema arabicum HOM05D000410 ORTHO05D002963 5.3e-06 55.1 117 35.0


User provided reference genes

Program Settings