Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G157700 Prunus persica HOM05D000539 ORTHO05D000233 1.4e-69 266.2 135 100.0
Prupe.6G193600 Prunus persica HOM05D000539 ORTHO05D000233 4.3e-18 95.1 95 52.6
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 5.5e-13 78.2 103 41.7
FAN23G1195 Fragaria x ananassa HOM05D000723 ORTHO05D001760 7.1e-13 77.8 97 43.3
FAN28G1329 Fragaria x ananassa HOM05D000723 ORTHO05D001760 7.1e-13 77.8 97 43.3
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 6.0e-12 74.7 73 52.1
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-11 73.6 87 42.5
RcHm_v2.0_Chr1g0340601 Rosa chinensis HOM05D000539 ORTHO05D000233 8.7e-11 70.9 73 47.9
RcHm_v2.0_Chr5g0079551 Rosa chinensis HOM05D000539 ORTHO05D000233 2.5e-10 69.3 73 50.7
RcHm_v2.0_Chr3g0482281 Rosa chinensis HOM05D002644 ORTHO05D000233 4.3e-10 68.6 88 42.0
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 7.4e-10 67.8 74 41.9
RcHm_v2.0_Chr1g0329531 Rosa chinensis HOM05D000539 ORTHO05D000233 7.4e-10 67.8 73 47.9
RcHm_v2.0_Chr4g0393861 Rosa chinensis HOM05D000539 ORTHO05D000233 7.4e-10 67.8 72 45.8
Ciclev10007052m.g Citrus clementina HOM05D000616 ORTHO05D000233 9.6e-10 67.4 106 35.8
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 1.6e-09 66.6 72 45.8
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 1.6e-09 66.6 66 50.0
Ciclev10013461m.g Citrus clementina HOM05D000616 ORTHO05D000233 2.1e-09 66.2 100 40.0
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.8e-09 65.1 70 42.9
RcHm_v2.0_Chr1g0325021 Rosa chinensis HOM05D000539 ORTHO05D000233 4.8e-09 65.1 92 40.2
RcHm_v2.0_Chr2g0102081 Rosa chinensis HOM05D000539 ORTHO05D000233 4.8e-09 65.1 72 44.4
RcHm_v2.0_Chr1g0318231 Rosa chinensis HOM05D000539 ORTHO05D000233 6.2e-09 64.7 78 43.6
RhsimUnG0218400 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.2e-09 64.3 91 35.2
GSVIVG01006109001 Vitis vinifera HOM05D000616 ORTHO05D000233 1.4e-08 63.5 84 38.1
GSVIVG01007627001 Vitis vinifera HOM05D000616 ORTHO05D000233 1.4e-08 63.5 84 38.1
GSVIVG01026840001 Vitis vinifera HOM05D000616 ORTHO05D000233 1.4e-08 63.5 84 38.1
GSVIVG01027893001 Vitis vinifera HOM05D000616 ORTHO05D000233 1.4e-08 63.5 84 38.1
Ciclev10023988m.g Citrus clementina HOM05D000616 ORTHO05D000233 1.8e-08 63.2 109 35.8
RcHm_v2.0_Chr5g0072981 Rosa chinensis HOM05D000539 ORTHO05D000233 1.8e-08 63.2 72 44.4
GSVIVG01008009001 Vitis vinifera HOM05D000616 ORTHO05D000233 2.4e-08 62.8 71 42.3
GSVIVG01014009001 Vitis vinifera HOM05D000616 ORTHO05D000233 2.4e-08 62.8 84 38.1
Ciclev10024574m.g Citrus clementina HOM05D000616 ORTHO05D000233 3.1e-08 62.4 97 37.1
Ciclev10033599m.g Citrus clementina HOM05D000616 ORTHO05D000233 3.1e-08 62.4 97 37.1
GSVIVG01005143001 Vitis vinifera HOM05D000616 ORTHO05D000233 3.1e-08 62.4 84 38.1
Rhsim05G0145200 Rhododendron simsii HOM05D000616 ORTHO05D000233 4.0e-08 62.0 91 34.1
FvH4_3g30982 Fragaria vesca HOM05D000539 ORTHO05D000233 5.3e-08 61.6 73 45.2
FAN02G2878 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.3e-08 61.6 73 45.2
FAN02G4277 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.3e-08 61.6 73 45.2
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 6.9e-08 61.2 106 35.8
RcHm_v2.0_Chr2g0123111 Rosa chinensis HOM05D000539 ORTHO05D000233 6.9e-08 61.2 66 43.9
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 6.9e-08 61.2 78 41.0
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 6.9e-08 61.2 78 41.0
GSVIVG01020196001 Vitis vinifera HOM05D000616 ORTHO05D000233 9.0e-08 60.8 84 36.9
RcHm_v2.0_Chr6g0271081 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-07 60.1 86 39.5
MELO3C032241.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.0e-07 59.7 74 39.2
FvH4_4g09822 Fragaria vesca HOM05D000107 ORTHO05D000062 2.0e-07 59.7 73 45.2
FAN17G0771 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.6e-07 59.3 73 37.0
RcHm_v2.0_Chr1g0352301 Rosa chinensis HOM05D000539 ORTHO05D000233 2.6e-07 59.3 104 34.6
SHI54874 Sapria himalayana HOM05D000616 ORTHO05D000233 2.6e-07 59.3 77 40.3
SHI55117 Sapria himalayana HOM05D000616 ORTHO05D000233 2.6e-07 59.3 77 40.3
Ciclev10033571m.g Citrus clementina HOM05D000616 ORTHO05D000233 3.4e-07 58.9 71 36.6
FvH4_2g07752 Fragaria vesca HOM05D000539 ORTHO05D000233 3.4e-07 58.9 72 41.7
RcHm_v2.0_Chr3g0481681 Rosa chinensis HOM05D000539 ORTHO05D000233 3.4e-07 58.9 74 40.5
Ciclev10003585m.g Citrus clementina HOM05D000616 ORTHO05D000233 4.5e-07 58.5 70 37.1
Ciclev10017763m.g Citrus clementina HOM05D000616 ORTHO05D000233 4.5e-07 58.5 70 37.1
FAN13G3216 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.6e-07 57.8 72 36.1
FAN16G0584 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.6e-07 57.8 72 36.1
FAN24G2468 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.6e-07 57.8 72 36.1
FAN28G1622 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.6e-07 57.8 72 36.1
FAN19G0390 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.0e-06 57.4 73 42.5
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 1.0e-06 57.4 114 29.8
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 1.0e-06 57.4 114 29.8
SHI23159 Sapria himalayana HOM05D000616 ORTHO05D000233 1.0e-06 57.4 91 35.2
SHI39147 Sapria himalayana HOM05D000616 ORTHO05D000233 1.0e-06 57.4 63 44.4
SHI46859 Sapria himalayana HOM05D000107 ORTHO05D000062 1.0e-06 57.4 96 37.5
FvH4_1g25001 Fragaria vesca HOM05D000539 ORTHO05D000233 1.3e-06 57.0 72 38.9
CANSAT54G2529 Cannabis sativa HOM05D009806 ORTHO05D000233 1.7e-06 56.6 71 39.4
CANSAT64G2228 Cannabis sativa HOM05D009806 ORTHO05D013821 1.7e-06 56.6 71 39.4
MELO3C027653.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.7e-06 56.6 80 35.0
FvH4_7g09681 Fragaria vesca HOM05D000539 ORTHO05D000233 1.7e-06 56.6 73 42.5
RcHm_v2.0_Chr4g0417051 Rosa chinensis HOM05D000539 ORTHO05D000233 1.7e-06 56.6 114 29.8
CANSAT01G0476 Cannabis sativa HOM05D009806 ORTHO05D000233 2.2e-06 56.2 71 39.4
FvH4_6g12902 Fragaria vesca HOM05D000539 ORTHO05D000233 2.2e-06 56.2 66 40.9
FAN26G0195 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.2e-06 56.2 69 36.2
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 2.2e-06 56.2 85 32.9
Rhsim02G0154800 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.2e-06 56.2 106 33.0
SHI17407 Sapria himalayana HOM05D000616 ORTHO05D000233 2.2e-06 56.2 75 40.0
SHI41978 Sapria himalayana HOM05D000616 ORTHO05D000233 2.2e-06 56.2 73 41.1
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 2.9e-06 55.8 66 43.9
FAN26G3042 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.9e-06 55.8 66 43.9
SHI21381 Sapria himalayana HOM05D000616 ORTHO05D000233 2.9e-06 55.8 74 40.5
SHI37724 Sapria himalayana HOM05D000616 ORTHO05D000233 2.9e-06 55.8 75 41.3
Nitab4.5_0001645g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.8e-06 55.5 107 33.6
RcHm_v2.0_Chr4g0414231 Rosa chinensis HOM05D000539 ORTHO05D000233 3.8e-06 55.5 74 41.9
SHI03572 Sapria himalayana HOM05D000616 ORTHO05D000233 3.8e-06 55.5 77 37.7
SHI30675 Sapria himalayana HOM05D000002 ORTHO05D000047 3.8e-06 55.5 85 31.8
FvH4_1g28483 Fragaria vesca HOM05D000539 ORTHO05D000233 4.9e-06 55.1 101 34.7
FvH4_2g21272 Fragaria vesca HOM05D000539 ORTHO05D000233 4.9e-06 55.1 101 34.7
FvH4_6g53023 Fragaria vesca HOM05D000539 ORTHO05D000233 4.9e-06 55.1 101 34.7
FAN17G3107 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.9e-06 55.1 72 34.7
FAN18G3492 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.9e-06 55.1 72 34.7
FAN25G0088 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.9e-06 55.1 72 34.7
SHI24294 Sapria himalayana HOM05D000616 ORTHO05D000233 4.9e-06 55.1 73 37.0
GSVIVG01000866001 Vitis vinifera HOM05D000539 ORTHO05D000233 4.9e-06 55.1 81 34.6
FAN22G1565 Fragaria x ananassa HOM05D000539 ORTHO05D000233 6.5e-06 54.7 66 36.4
RcHm_v2.0_Chr4g0401831 Rosa chinensis HOM05D000539 ORTHO05D000233 6.5e-06 54.7 78 38.5
SHI04381 Sapria himalayana HOM05D000616 ORTHO05D000233 6.5e-06 54.7 88 36.4
SHI39977 Sapria himalayana HOM05D000616 ORTHO05D000233 6.5e-06 54.7 63 41.3
FvH4_1g20121 Fragaria vesca HOM05D000539 ORTHO05D000233 8.4e-06 54.3 72 37.5
FvH4_4g10052 Fragaria vesca HOM05D000539 ORTHO05D000233 8.4e-06 54.3 57 47.4
FAN03G0903 Fragaria x ananassa HOM05D000539 ORTHO05D000233 8.4e-06 54.3 69 36.2
SHI01982 Sapria himalayana HOM05D000616 ORTHO05D000233 8.4e-06 54.3 79 36.7
SHI36983 Sapria himalayana HOM05D000616 ORTHO05D000233 8.4e-06 54.3 77 37.7
SHI40588 Sapria himalayana HOM05D000616 ORTHO05D000233 8.4e-06 54.3 76 38.2
SHI40634 Sapria himalayana HOM05D000616 ORTHO05D000233 8.4e-06 54.3 76 38.2
SHI42017 Sapria himalayana HOM05D000616 ORTHO05D000233 8.4e-06 54.3 73 38.4
SHI49305 Sapria himalayana HOM05D000616 ORTHO05D000233 8.4e-06 54.3 98 33.7


User provided reference genes

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