Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 1.5e-225 785.8 390 100.0
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 5.0e-176 621.3 397 80.4
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 3.2e-175 618.6 392 79.8
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 5.5e-175 617.8 391 79.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 8.0e-174 614.0 390 78.5
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.3e-171 604.4 392 76.3
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.6e-169 599.7 392 75.8
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 3.5e-169 598.6 392 76.0
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.5e-168 594.3 392 75.0
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 8.5e-168 594.0 390 75.6
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.2e-167 592.0 390 76.2
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.2e-167 591.7 414 71.7
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.0e-165 587.0 391 75.7
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 8.8e-165 583.9 407 73.5
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 1.2e-164 583.6 407 72.7
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.2e-164 583.6 407 73.5
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 1.5e-164 583.2 391 75.2
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.5e-164 583.2 385 75.8
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.4e-164 582.0 392 75.5
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 8.3e-163 577.4 390 72.6
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.4e-162 576.6 388 74.0
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.7e-161 572.4 407 71.0
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 3.5e-161 572.0 391 73.7
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 3.5e-161 572.0 387 73.9
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 1.7e-160 569.7 391 74.9
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.3e-160 569.3 392 71.9
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 3.8e-160 568.5 391 74.9
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 8.6e-160 567.4 392 74.2
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.1e-159 567.0 391 73.4
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.5e-159 565.8 392 71.4
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 9.5e-159 563.9 391 73.7
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 2.8e-158 562.4 366 77.0
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 4.7e-158 561.6 392 71.4
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 8.0e-158 560.8 391 73.1
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.0e-157 560.5 391 72.6
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 2.3e-157 559.3 363 77.7
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.3e-157 559.3 390 71.5
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 3.4e-156 555.4 374 74.6
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 3.4e-156 555.4 389 72.2
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 9.8e-156 553.9 391 72.1
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 9.8e-156 553.9 390 72.6
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 2.2e-155 552.7 389 71.7
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 3.7e-155 552.0 390 71.3
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 5.4e-154 548.1 391 71.9
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 9.2e-154 547.4 394 70.1
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 2.7e-153 545.8 392 70.9
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.0e-152 543.9 389 68.6
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 2.3e-152 542.7 381 73.0
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 3.9e-152 542.0 390 71.0
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 8.6e-152 540.8 390 69.7
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.5e-151 540.0 384 71.9
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 2.5e-151 539.3 405 68.1
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 9.5e-151 537.3 391 71.6
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 9.5e-151 537.3 388 70.4
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 4.7e-150 535.0 390 68.7
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 2.3e-149 532.7 390 70.5
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 2.3e-149 532.7 391 69.3
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 2.3e-149 532.7 389 67.6
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 2.3e-149 532.7 352 77.3
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 8.9e-149 530.8 400 68.2
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 1.5e-148 530.0 385 71.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.5e-148 530.0 391 68.5
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 3.7e-147 525.4 390 68.7
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 6.4e-147 524.6 390 66.7
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.1e-146 523.9 415 64.8
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 4.6e-145 518.5 391 66.5
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 8.6e-144 514.2 394 67.3
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.1e-143 513.8 391 66.5
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 2.5e-143 512.7 391 66.2
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 9.5e-143 510.8 393 66.2
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 1.6e-142 510.0 392 66.1
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.6e-142 510.0 393 66.2
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 2.8e-142 509.2 390 64.9
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 8.1e-142 507.7 378 69.8
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.4e-141 506.9 397 67.0
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 8.9e-141 504.2 377 67.4
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 1.2e-140 503.8 391 65.0
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 5.8e-140 501.5 391 64.5
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 7.5e-140 501.1 365 69.0
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 4.9e-139 498.4 392 65.1
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 8.3e-139 497.7 391 63.9
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 9.2e-138 494.2 345 72.8
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 1.2e-137 493.8 392 64.0
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 7.8e-137 491.1 390 63.6
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 7.8e-137 491.1 390 63.6
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.0e-136 490.7 389 63.8
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.3e-136 490.3 377 66.8
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 8.6e-136 487.6 393 65.6
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.2e-132 477.2 425 60.9
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 6.4e-131 471.5 369 66.4
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 5.1e-128 461.8 417 59.5
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.1e-127 460.7 391 61.9
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 1.8e-125 453.4 349 66.8
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 5.2e-125 451.8 340 69.1
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 5.3e-117 425.2 377 59.4
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 4.9e-115 418.7 251 78.9
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 5.4e-114 415.2 326 65.3
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.2e-113 414.1 263 76.4
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 5.1e-112 408.7 342 61.1
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.4e-101 373.2 319 59.6
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 2.5e-98 363.2 389 51.2
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 8.7e-96 354.8 323 58.2
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 4.8e-94 349.0 265 67.2
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.6e-89 334.0 262 62.6
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.8e-88 330.5 202 78.7
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 1.1e-85 321.2 193 77.2
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 2.0e-79 300.4 163 87.1
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 4.8e-78 295.8 226 69.0
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 4.4e-71 272.7 279 48.0
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 7.0e-69 265.4 194 71.1
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 2.3e-64 250.4 204 62.3
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.5e-63 247.7 188 63.8
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.3e-62 244.6 130 88.5
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 2.0e-55 220.7 217 51.2
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 1.3e-51 208.0 186 53.2
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.4e-48 198.0 113 79.6
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 6.3e-46 189.1 189 55.0
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 7.0e-45 185.7 124 75.0
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 9.5e-42 175.3 133 64.7
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 8.0e-41 172.2 131 64.9
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 1.0e-40 171.8 133 63.9
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.5e-39 167.9 160 58.1
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 8.9e-32 142.1 200 41.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 2.0e-31 141.0 243 37.4
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.2e-28 131.7 137 55.5
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 2.7e-28 130.6 183 44.8
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 6.0e-28 129.4 84 73.8
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 4.3e-26 123.2 113 56.6
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 3.6e-25 120.2 72 80.6
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 6.2e-25 119.4 74 73.0
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 5.2e-24 116.3 109 56.9
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.9e-22 110.5 63 81.0
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 6.8e-16 89.4 155 42.6
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 1.7e-14 84.7 45 86.7
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 1.7e-11 74.7 45 75.6
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 1.5e-10 71.6 67 61.2
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 1.9e-10 71.2 105 41.0
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 2.2e-06 57.8 34 73.5


User provided reference genes

Program Settings