Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 1.7e-120 436.0 227 100.0
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 1.1e-114 416.8 226 96.0
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 4.6e-113 411.4 227 92.5
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 4.6e-113 411.4 224 94.2
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 6.6e-112 407.5 229 93.9
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.1e-111 406.8 229 93.4
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.5e-111 405.6 226 94.2
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.3e-111 405.2 227 91.2
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.3e-111 405.2 227 91.2
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 5.6e-111 404.4 232 90.1
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 2.8e-110 402.1 228 90.8
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 3.6e-110 401.7 227 92.5
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 3.6e-110 401.7 230 90.0
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 4.7e-110 401.4 230 91.7
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 4.7e-110 401.4 227 90.3
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 8.1e-110 400.6 229 90.0
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.1e-109 400.2 227 89.9
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.8e-109 399.4 226 91.6
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 2.3e-109 399.1 227 89.9
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 3.1e-109 398.7 227 90.7
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 4.0e-109 398.3 225 91.1
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 8.9e-109 397.1 226 90.3
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 8.9e-109 397.1 226 90.3
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 1.5e-108 396.4 227 89.4
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.6e-108 395.6 226 89.8
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 2.6e-108 395.6 225 89.3
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 3.4e-108 395.2 234 87.6
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 3.4e-108 395.2 226 90.3
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 5.8e-108 394.4 227 89.4
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.8e-108 394.4 227 89.4
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 5.8e-108 394.4 225 88.4
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 9.9e-108 393.7 227 89.0
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 9.9e-108 393.7 229 88.6
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 1.3e-107 393.3 230 90.0
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.3e-107 393.3 224 89.3
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.3e-107 393.3 256 83.6
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 1.3e-107 393.3 231 88.7
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.9e-107 392.1 227 89.4
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.9e-107 392.1 227 89.0
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 2.9e-107 392.1 229 88.6
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 3.7e-107 391.7 227 90.3
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 4.9e-107 391.3 227 89.0
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 4.9e-107 391.3 231 87.9
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 6.4e-107 391.0 231 88.7
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 8.3e-107 390.6 227 87.7
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 8.3e-107 390.6 232 87.1
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 8.3e-107 390.6 235 86.8
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.1e-106 390.2 227 89.9
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.1e-106 390.2 227 89.9
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 1.4e-106 389.8 227 89.4
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.4e-106 389.8 227 87.7
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.9e-106 389.4 227 89.0
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.9e-106 389.4 231 86.1
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.9e-106 389.4 225 89.3
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.9e-106 389.4 232 87.1
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 2.4e-106 389.0 230 87.4
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 3.2e-106 388.7 227 89.0
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 3.2e-106 388.7 227 89.0
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 3.2e-106 388.7 223 90.1
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 3.2e-106 388.7 233 87.1
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 3.2e-106 388.7 231 86.1
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 4.1e-106 388.3 230 87.4
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 4.1e-106 388.3 225 88.4
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 4.1e-106 388.3 227 89.4
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 5.4e-106 387.9 227 89.4
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 5.4e-106 387.9 227 89.4
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 5.4e-106 387.9 227 88.1
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.2e-105 386.7 227 88.5
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 1.2e-105 386.7 227 89.0
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 1.6e-105 386.3 225 87.1
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 1.6e-105 386.3 230 86.5
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 1.6e-105 386.3 229 88.6
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.1e-105 386.0 227 86.8
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 2.1e-105 386.0 226 88.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.7e-105 385.6 211 93.8
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 2.7e-105 385.6 227 86.8
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 3.5e-105 385.2 222 88.7
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 3.5e-105 385.2 226 88.1
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 4.6e-105 384.8 228 89.5
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 6.0e-105 384.4 227 88.1
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 6.0e-105 384.4 224 86.6
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 7.8e-105 384.0 231 87.9
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.0e-104 383.6 229 87.8
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.0e-104 383.6 227 88.1
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.3e-104 383.3 231 85.7
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 1.3e-104 383.3 229 88.2
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.3e-104 383.3 227 87.2
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 3.0e-104 382.1 232 85.3
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 3.9e-104 381.7 227 88.1
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 5.1e-104 381.3 227 88.1
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 5.1e-104 381.3 227 88.1
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 5.1e-104 381.3 227 88.1
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.1e-103 380.2 227 87.7
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 1.5e-103 379.8 231 84.8
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.5e-103 379.8 215 91.2
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.5e-103 379.8 231 84.8
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.9e-103 379.4 231 85.3
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 2.5e-103 379.0 229 85.6
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.5e-103 379.0 228 86.8
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 7.3e-103 377.5 232 87.1
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 2.1e-102 375.9 224 85.7
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 2.8e-102 375.6 229 84.7
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 6.2e-102 374.4 231 87.0
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 1.4e-101 373.2 224 84.4
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.8e-101 372.9 230 86.1
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 6.8e-101 370.9 224 87.5
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 8.9e-101 370.5 223 86.5
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.5e-100 369.8 220 85.5
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 3.2e-98 362.1 228 83.3
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 4.2e-98 361.7 222 82.9
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 1.2e-97 360.1 203 90.6
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 1.7e-96 356.3 300 67.0
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 3.8e-91 338.6 192 92.7
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 8.4e-91 337.4 233 78.5
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 7.3e-87 324.3 214 76.2
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 8.1e-86 320.9 206 79.1
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.2e-83 312.8 190 86.8
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 2.4e-82 309.3 210 76.7
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 4.2e-82 308.5 179 89.9
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 1.9e-79 299.7 194 83.0
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 2.8e-78 295.8 220 72.7
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 4.0e-77 292.0 158 98.1
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.5e-76 288.5 161 93.8
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 2.2e-75 286.2 158 93.7
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 4.9e-75 285.0 175 84.6
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 6.5e-75 284.6 158 93.7
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.3e-72 276.9 180 79.4
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 2.3e-72 276.2 159 91.8
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 6.7e-72 274.6 161 88.8
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.3e-70 270.4 166 86.1
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-68 263.8 186 74.7
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 2.4e-61 239.6 160 77.5
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 6.7e-56 221.5 124 94.4
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 9.1e-53 211.1 175 70.9
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.1e-45 185.7 110 90.9
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 8.5e-43 177.9 103 89.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 8.0e-41 171.4 94 95.7
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.5e-36 156.0 158 57.6
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 6.5e-35 151.8 88 93.2
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 1.6e-28 130.6 79 79.7
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 7.2e-26 121.7 206 38.8
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 6.1e-25 118.6 78 79.5
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 9.8e-23 111.3 57 94.7
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 3.7e-22 109.4 63 82.5
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 7.2e-18 95.1 66 72.7
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 9.8e-15 84.7 65 66.2
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 1.5e-10 70.9 46 76.1


User provided reference genes

Program Settings