Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G151000 Prunus persica HOM05D003775 ORTHO05D004314 1.7e-117 426.0 216 100.0
Prupe.2G027700 Prunus persica HOM05D003775 ORTHO05D004314 3.4e-81 305.4 171 94.2
MD07G1027400 Malus domestica HOM05D003775 ORTHO05D004314 5.0e-61 238.4 171 76.0
Prupe.3G154500 Prunus persica HOM05D003775 ORTHO05D004314 7.3e-60 234.6 203 67.5
MD02G1296700 Malus domestica HOM05D003775 ORTHO05D004314 1.7e-56 223.4 171 73.1
RcHm_v2.0_Chr1g0319451 Rosa chinensis HOM05D003775 ORTHO05D004314 1.1e-47 194.1 176 61.4
FvH4_7g02050 Fragaria vesca HOM05D003775 ORTHO05D004314 7.6e-41 171.4 176 55.7
FAN06G3050 Fragaria x ananassa HOM05D003775 ORTHO05D004314 9.9e-41 171.0 176 55.7
FAN10G1046 Fragaria x ananassa HOM05D003775 ORTHO05D004314 1.2e-38 164.1 175 54.3
FAN01G0886 Fragaria x ananassa HOM05D003775 ORTHO05D004314 1.5e-36 157.1 176 52.3
Haze_03108 Corylus avellana HOM05D003775 ORTHO05D004314 2.1e-30 136.7 171 53.2
QL04p013175 Quercus lobata HOM05D003775 ORTHO05D004314 2.1e-30 136.7 164 51.2
Cfa010842 Carpinus fangiana HOM05D003775 ORTHO05D004314 1.8e-29 133.7 166 52.4
CiPaw.14G005400 Carya illinoinensis HOM05D003775 ORTHO05D004314 1.8e-29 133.7 171 50.9
MD02G1296600 Malus domestica HOM05D003775 ORTHO05D004314 3.0e-29 132.9 130 60.0
Manes.11G002300 Manihot esculenta HOM05D003775 ORTHO05D004314 5.5e-23 112.1 180 42.2
Thecc.10G005200 Theobroma cacao HOM05D003775 ORTHO05D004314 1.6e-22 110.5 169 43.2
Dinv32058 Davidia involucrata HOM05D003775 ORTHO05D004314 2.3e-21 106.7 180 45.6
Manes.04G163700 Manihot esculenta HOM05D003775 ORTHO05D004314 2.3e-21 106.7 147 42.2
Dinv39690 Davidia involucrata HOM05D003775 ORTHO05D004314 4.3e-20 102.4 173 44.5
Duzib114G0793 Durio zibethinus HOM05D003775 ORTHO05D004314 1.6e-19 100.5 169 43.2
Gohir.A06G159000 Gossypium hirsutum HOM05D003775 ORTHO05D004314 2.1e-19 100.1 178 40.4
Duzib106G0584 Durio zibethinus HOM05D003775 ORTHO05D004314 6.2e-19 98.6 129 48.8
Gohir.D06G164900 Gossypium hirsutum HOM05D003775 ORTHO05D004314 6.2e-19 98.6 178 39.9
Gorai.010G192300 Gossypium raimondii HOM05D003775 ORTHO05D004314 6.2e-19 98.6 178 39.9
Ciclev10031129m.g Citrus clementina HOM05D003775 ORTHO05D004314 3.1e-18 96.3 190 41.6
Atru.chr11.2505 Acer truncatum HOM05D003775 ORTHO05D004314 6.9e-18 95.1 174 40.8
Potri.003G202800 Populus trichocarpa HOM05D003775 ORTHO05D004314 9.0e-18 94.7 181 38.7
COL.COLO4_25844 Corchorus olitorius HOM05D003775 ORTHO05D004314 1.5e-17 94.0 172 39.5
Dinv04593 Davidia involucrata HOM05D003775 ORTHO05D004314 2.0e-17 93.6 166 44.0
GSVIVG01000859001 Vitis vinifera HOM05D003775 ORTHO05D004314 2.0e-17 93.6 172 41.9
Dinv00615 Davidia involucrata HOM05D003775 ORTHO05D004314 2.6e-17 93.2 166 44.0
Nn3g16658 Nelumbo nucifera HOM05D003775 ORTHO05D004314 4.5e-17 92.4 138 43.5
Cpa.g.sc197.14 Carica papaya HOM05D003775 ORTHO05D004314 1.0e-16 91.3 149 43.0
CSS0036530 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 1.7e-16 90.5 152 41.4
CSS0045062 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 1.7e-16 90.5 152 41.4
TAR633G1887 Trochodendron aralioides HOM05D003775 ORTHO05D004314 2.9e-16 89.7 160 40.6
Sabra03G0149800 Salix brachista HOM05D003775 ORTHO05D004314 3.8e-16 89.4 181 35.9
TAR636G2085 Trochodendron aralioides HOM05D003775 ORTHO05D004314 4.6e-14 82.4 161 41.6
Sed0002392 Sechium edule HOM05D003775 ORTHO05D004314 6.0e-14 82.0 163 38.0
arahy.Tifrunner.gnm1.ann1.F7MMZ3 Arachis hypogaea HOM05D003775 ORTHO05D004314 1.8e-13 80.5 192 37.5
MELO3C011731.2 Cucumis melo HOM05D003775 ORTHO05D004314 1.8e-13 80.5 195 35.9
Glyma.12G011800 Glycine max HOM05D003775 ORTHO05D004314 1.8e-13 80.5 156 41.7
PGR031G2286 Punica granatum HOM05D003775 ORTHO05D004314 1.8e-13 80.5 184 33.2
Lalb_Chr01g0000591 Lupinus albus HOM05D003775 ORTHO05D004314 3.9e-13 79.3 156 41.0
ClCG02G013920 Citrullus lanatus HOM05D003775 ORTHO05D004314 6.7e-13 78.6 174 34.5
CsaV3_5G006240 Cucumis sativus L. HOM05D003775 ORTHO05D004314 1.1e-12 77.8 195 34.9
Sabra01G0017100 Salix brachista HOM05D003775 ORTHO05D004314 1.1e-12 77.8 163 40.5
Glyma.09G225200 Glycine max HOM05D003775 ORTHO05D004314 1.9e-12 77.0 172 38.4
Medtr2g060050 Medicago truncatula HOM05D003775 ORTHO05D004314 1.6e-11 73.9 154 39.0
Ca_00245_v3 Cicer arietinum L. HOM05D003775 ORTHO05D004314 3.7e-11 72.8 154 39.0
Lalb_Chr19g0140171 Lupinus albus HOM05D003775 ORTHO05D004314 3.7e-11 72.8 147 40.1
TWI15G0411 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 3.7e-11 72.8 168 33.3
Psat7g201120 Pisum sativum HOM05D003775 ORTHO05D004314 6.3e-11 72.0 153 39.2
arahy.Tifrunner.gnm1.ann1.IE4AJN Arachis hypogaea HOM05D003775 ORTHO05D004314 8.2e-11 71.6 105 46.7
RcHm_v2.0_Chr5g0026451 Rosa chinensis HOM05D003775 ORTHO05D004314 8.2e-11 71.6 58 67.2
Sed0004278 Sechium edule HOM05D003775 ORTHO05D004314 1.1e-10 71.2 164 34.1
TWI63G1774 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 1.4e-10 70.9 164 32.9
Lj7C578T6 Lonicera japonica HOM05D003775 ORTHO05D004314 3.1e-10 69.7 177 35.6
Nn2g15064 Nelumbo nucifera HOM05D003775 ORTHO05D004314 5.3e-10 68.9 139 39.6
Rhsim07G0061800 Rhododendron simsii HOM05D003775 ORTHO05D004314 5.3e-10 68.9 151 39.1
VMungo1127G0258 Vigna mungo HOM05D003775 ORTHO05D004314 6.9e-10 68.6 155 36.1
Phvul.011G014600 Phaseolus vulgaris HOM05D003775 ORTHO05D004314 9.0e-10 68.2 149 36.9
Lj3g0020763 Lotus japonicus HOM05D003775 ORTHO05D004314 1.2e-09 67.8 177 37.3
CANSAT80G1378 Cannabis sativa HOM05D003775 ORTHO05D004314 2.6e-09 66.6 172 35.5
vmacro13720 Vaccinium macrocarpon HOM05D003775 ORTHO05D004314 2.6e-09 66.6 140 39.3
Actinidia06274 Actinidia chinensis HOM05D003775 ORTHO05D004314 3.4e-09 66.2 145 36.6
Eucgr.G03263 Eucalyptus grandis HOM05D003775 ORTHO05D004314 4.5e-09 65.9 143 38.5
Hund18010 Selenicereus undatus HOM05D003775 ORTHO05D004314 2.2e-08 63.5 147 38.1
Sc10g0004200 Simmondsia chinensis HOM05D003775 ORTHO05D004314 6.5e-08 62.0 146 37.0
Sc14g0005810 Simmondsia chinensis HOM05D003775 ORTHO05D004314 8.5e-08 61.6 174 32.8
BcaC09g51876 Brassica carinata HOM05D003775 ORTHO05D004314 1.4e-07 60.8 86 47.7
BcaNung03431 Brassica carinata HOM05D003775 ORTHO05D004314 5.5e-07 58.9 171 33.3
AUR62019122 Chenopodium quinoa HOM05D003775 ORTHO05D004314 1.2e-06 57.8 181 30.4
EL10Ac1g00474 Beta vulgaris HOM05D003775 ORTHO05D004314 1.6e-06 57.4 160 34.4
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 2.1e-06 57.0 193 33.7
Aqoxy6G01356 Aquilegia oxysepala HOM05D003775 ORTHO05D004314 2.7e-06 56.6 146 34.2
Carub.0007s0965 Capsella rubella HOM05D003775 ORTHO05D004314 3.6e-06 56.2 199 31.2
TPR.G20248 Trifolium pratense HOM05D003775 ORTHO05D004314 3.6e-06 56.2 121 38.8
MBI16_g10269_MAGBIO Magnolia biondii HOM05D003775 ORTHO05D004314 4.6e-06 55.8 144 31.9
AUR62014380 Chenopodium quinoa HOM05D003775 ORTHO05D004314 6.1e-06 55.5 176 30.7
A01p07290 Brassica napus HOM05D003775 ORTHO05D004314 7.9e-06 55.1 81 46.9
BraA01t00678Z Brassica rapa HOM05D003775 ORTHO05D004314 7.9e-06 55.1 81 46.9


User provided reference genes

Program Settings