Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 1.0e-67 260.0 134 100.0
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 5.7e-47 191.0 135 77.0
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 4.9e-46 188.0 131 75.6
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 2.4e-45 185.7 131 74.8
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 3.1e-45 185.3 131 74.0
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 4.5e-44 181.4 130 75.4
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 6.6e-43 177.6 131 72.5
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 3.6e-41 171.8 131 70.2
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.4e-40 169.9 131 71.0
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 4.1e-37 158.3 130 66.2
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 1.6e-36 156.4 130 63.1
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 7.8e-36 154.1 129 65.1
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 8.6e-35 150.6 129 63.6
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 1.5e-34 149.8 131 65.6
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 1.9e-34 149.4 138 64.5
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 5.6e-34 147.9 132 62.1
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 5.6e-34 147.9 130 64.6
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 7.3e-34 147.5 131 64.1
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 1.2e-33 146.7 133 62.4
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 1.2e-33 146.7 133 62.4
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 1.2e-33 146.7 108 68.5
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 1.2e-33 146.7 134 64.2
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 8.0e-33 144.1 130 61.5
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 1.4e-32 143.3 130 66.2
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 1.8e-32 142.9 132 59.1
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 3.1e-32 142.1 130 61.5
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 3.1e-32 142.1 116 66.4
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 3.1e-32 142.1 133 59.4
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 4.0e-32 141.7 129 58.1
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 5.2e-32 141.4 132 60.6
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 6.8e-32 141.0 130 63.1
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 8.9e-32 140.6 99 70.7
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 8.9e-32 140.6 130 57.7
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 8.9e-32 140.6 130 57.7
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.2e-31 140.2 130 60.0
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 1.2e-31 140.2 131 60.3
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 1.5e-31 139.8 132 59.8
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 2.6e-31 139.0 96 72.9
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 3.4e-31 138.7 133 60.9
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 3.4e-31 138.7 129 60.5
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 3.4e-31 138.7 75 89.3
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 3.4e-31 138.7 130 61.5
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 4.4e-31 138.3 96 72.9
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 4.4e-31 138.3 129 58.9
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 4.4e-31 138.3 92 76.1
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 5.8e-31 137.9 132 59.8
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 5.8e-31 137.9 128 62.5
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 7.5e-31 137.5 133 58.6
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 7.5e-31 137.5 132 59.8
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 7.5e-31 137.5 132 59.8
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 9.8e-31 137.1 96 70.8
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 9.8e-31 137.1 123 60.2
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 9.8e-31 137.1 132 60.6
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 9.8e-31 137.1 71 91.5
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 9.8e-31 137.1 129 59.7
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 1.3e-30 136.7 126 60.3
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 1.7e-30 136.3 96 70.8
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 1.7e-30 136.3 96 70.8
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 1.7e-30 136.3 99 69.7
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 1.7e-30 136.3 76 85.5
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 2.2e-30 136.0 123 59.3
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 2.2e-30 136.0 123 59.3
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 2.9e-30 135.6 98 68.4
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 2.9e-30 135.6 129 58.9
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 3.7e-30 135.2 129 61.2
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 4.9e-30 134.8 95 72.6
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 4.9e-30 134.8 132 58.3
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 4.9e-30 134.8 72 88.9
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 8.3e-30 134.0 131 58.0
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 1.1e-29 133.7 91 71.4
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 1.1e-29 133.7 72 87.5
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.4e-29 133.3 75 82.7
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 1.4e-29 133.3 138 57.2
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 1.9e-29 132.9 123 58.5
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 1.9e-29 132.9 131 59.5
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 1.9e-29 132.9 130 59.2
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 2.4e-29 132.5 104 66.3
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 4.1e-29 131.7 133 61.7
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 4.1e-29 131.7 70 87.1
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 5.4e-29 131.3 111 58.6
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 5.4e-29 131.3 161 51.6
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 7.0e-29 131.0 129 58.1
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 7.0e-29 131.0 123 61.8
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 1.2e-28 130.2 130 56.9
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 4.6e-28 128.3 106 64.2
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 1.7e-27 126.3 112 58.9
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 1.7e-27 126.3 99 63.6
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 3.9e-27 125.2 74 78.4
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 6.6e-27 124.4 99 62.6
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 8.6e-27 124.0 120 60.0
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 1.1e-26 123.6 116 56.9
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 1.1e-26 123.6 88 69.3
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 1.4e-24 116.7 75 70.7
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 4.0e-24 115.2 149 49.7
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 2.0e-23 112.8 129 48.8
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 2.2e-22 109.4 126 50.0
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 1.4e-21 106.7 122 51.6
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 5.4e-21 104.8 56 85.7
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 1.2e-20 103.6 127 49.6
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 2.1e-20 102.8 72 58.3
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 2.3e-19 99.4 95 58.9
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 3.9e-19 98.6 71 63.4
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 1.2e-17 93.6 64 60.9
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 3.6e-17 92.0 130 39.2
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 2.3e-16 89.4 70 51.4
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 1.7e-14 83.2 85 56.5
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 5.4e-13 78.2 84 56.0
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 3.0e-11 72.4 35 94.3
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 2.8e-09 65.9 59 55.9
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 2.8e-09 65.9 37 73.0
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 4.7e-09 65.1 60 55.0
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 5.2e-08 61.6 32 87.5
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 8.9e-08 60.8 42 71.4
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 8.9e-08 60.8 60 53.3
Gohir.D09G100550 Gossypium hirsutum HOM05D007267 ORTHO05D009053 4.4e-07 58.5 43 69.8


User provided reference genes

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