Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G149200 Prunus persica HOM05D007375 ORTHO05D009293 2.3e-52 208.8 114 100.0
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 2.1e-29 132.5 108 75.0
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 9.9e-24 113.6 109 67.9
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 2.9e-23 112.1 105 67.6
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.7e-20 102.8 106 66.0
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 2.3e-20 102.4 102 65.7
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 1.5e-19 99.8 101 63.4
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 1.9e-19 99.4 105 64.8
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 2.8e-18 95.5 101 60.4
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 2.8e-18 95.5 104 65.4
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 6.2e-18 94.4 101 59.4
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 8.1e-18 94.0 101 60.4
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 1.1e-17 93.6 101 59.4
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 1.1e-17 93.6 101 59.4
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 4.0e-17 91.7 107 56.1
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 4.0e-17 91.7 110 61.8
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 5.3e-17 91.3 111 61.3
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 6.9e-17 90.9 110 60.9
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 4.5e-16 88.2 73 67.1
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 1.1e-14 83.6 102 52.9
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 4.2e-14 81.6 104 51.9
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 4.2e-14 81.6 104 51.9
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 5.4e-14 81.3 74 67.6
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 5.4e-14 81.3 115 54.8
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 1.2e-13 80.1 112 53.6
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 1.6e-13 79.7 107 55.1
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 1.6e-13 79.7 110 50.9
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 4.6e-13 78.2 87 51.7
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 4.6e-13 78.2 110 50.0
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 6.0e-13 77.8 104 51.9
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 1.0e-12 77.0 87 50.6
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 1.8e-12 76.3 101 52.5
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 1.9e-11 72.8 101 51.5
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 3.3e-11 72.0 44 81.8
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 5.6e-11 71.2 91 51.6
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 1.6e-10 69.7 98 49.0
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 1.6e-10 69.7 117 50.4
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 4.8e-10 68.2 105 55.2
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 8.1e-10 67.4 90 47.8
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 5.3e-09 64.7 40 82.5
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 6.9e-09 64.3 121 46.3
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 6.9e-09 64.3 113 50.4
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 9.0e-09 63.9 112 47.3
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 9.0e-09 63.9 107 46.7
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 1.2e-08 63.5 113 44.2
TPR.G22173 Trifolium pratense HOM05D007375 ORTHO05D009293 1.2e-08 63.5 111 48.6
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 1.5e-08 63.2 107 49.5
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 2.6e-08 62.4 103 50.5
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 2.6e-08 62.4 106 47.2
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 7.6e-08 60.8 105 54.3
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 7.6e-08 60.8 105 53.3
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.7e-07 59.7 102 49.0
PGR119G2080 Punica granatum HOM05D007375 ORTHO05D009293 2.9e-07 58.9 106 43.4
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 3.8e-07 58.5 108 44.4
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 3.8e-07 58.5 104 43.3
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 1.1e-06 57.0 103 46.6
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 1.4e-06 56.6 110 42.7
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 1.4e-06 56.6 104 48.1
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 4.2e-06 55.1 104 46.2
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 7.1e-06 54.3 103 42.7
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 9.3e-06 53.9 53 50.9


User provided reference genes

Program Settings