Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 9.3e-148 526.9 282 100.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.2e-115 420.2 284 81.0
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 5.7e-113 411.4 292 77.1
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 6.3e-104 381.3 282 74.1
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 6.3e-104 381.3 282 74.1
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 3.5e-102 375.6 282 68.8
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.3e-101 373.6 318 63.2
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 4.2e-100 368.6 282 67.7
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.1e-97 360.5 255 73.3
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.8e-96 355.1 258 72.5
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.8e-95 353.2 288 64.2
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.6e-94 349.4 282 64.5
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.5e-94 349.0 258 71.3
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 7.7e-94 347.8 288 63.5
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 7.7e-94 347.8 282 66.0
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.0e-93 347.4 258 72.5
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.9e-93 345.9 288 64.6
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 6.5e-93 344.7 282 65.6
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 1.5e-92 343.6 281 68.0
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.1e-91 339.7 259 66.4
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 4.0e-90 335.5 282 64.5
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 4.4e-89 332.0 282 63.5
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 9.8e-89 330.9 284 62.3
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 4.8e-88 328.6 288 62.8
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.1e-87 327.4 313 58.8
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.1e-87 327.4 313 58.8
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.8e-87 326.6 287 60.3
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.6e-86 323.6 282 61.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.6e-86 323.6 292 58.9
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.7e-85 320.1 287 59.9
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.2e-85 319.7 285 59.6
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 6.5e-85 318.2 284 60.9
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 3.2e-84 315.8 290 59.7
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.5e-84 315.1 287 58.9
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.2e-84 314.7 287 59.2
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 8.8e-82 307.8 283 58.7
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 8.8e-82 307.8 282 64.9
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.2e-81 307.4 284 58.5
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.5e-81 307.0 293 62.1
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.0e-81 306.6 332 53.0
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 4.4e-81 305.4 283 64.0
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 7.5e-81 304.7 283 58.3
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.4e-79 300.4 282 56.0
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.1e-79 299.3 258 63.6
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.0e-78 296.6 283 60.4
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.7e-78 296.2 262 65.6
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 3.5e-78 295.8 282 63.1
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.5e-78 295.4 380 47.6
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.9e-77 292.7 393 46.1
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.1e-76 290.8 285 56.5
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.6e-75 285.8 284 55.6
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 4.4e-73 278.9 289 58.1
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 9.8e-73 277.7 284 56.7
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 2.2e-72 276.6 284 56.3
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.4e-71 273.9 291 56.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 3.6e-67 259.2 286 53.5
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 4.1e-63 245.7 282 48.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 5.4e-63 245.4 208 63.9
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 2.0e-62 243.4 203 65.5
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 4.6e-62 242.3 284 49.3
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 2.5e-60 236.5 293 47.4
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 8.1e-59 231.5 303 46.9
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.4e-58 230.7 242 54.1
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 3.1e-58 229.6 292 48.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 6.8e-58 228.4 198 61.1
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.6e-57 226.5 228 53.9
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 4.4e-57 225.7 242 53.7
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.9e-56 223.0 237 53.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.9e-55 220.3 283 47.3
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.6e-54 217.2 292 45.9
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.1e-54 216.9 220 55.0
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.7e-54 216.5 286 47.9
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 3.5e-54 216.1 292 45.9
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 3.5e-54 216.1 292 45.9
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 6.0e-54 215.3 291 43.6
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.0e-53 214.5 292 45.5
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.3e-53 214.2 293 44.4
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 3.0e-53 213.0 165 65.5
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 8.6e-53 211.5 289 46.4
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.1e-52 211.1 292 45.2
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.5e-52 210.7 293 46.8
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.3e-52 209.5 222 52.7
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.2e-51 207.6 297 45.1
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.8e-51 206.5 297 44.1
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.6e-51 206.1 322 43.5
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 6.2e-51 205.3 321 43.6
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 3.1e-50 203.0 301 48.5
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 6.8e-50 201.8 204 54.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.2e-49 201.1 294 49.0
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.5e-49 200.7 295 48.8
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.5e-49 200.7 275 49.5
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.6e-49 199.9 293 48.5
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.4e-49 199.5 271 45.4
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.1e-47 192.6 226 47.8
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.1e-46 190.3 283 43.8
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.1e-46 190.3 282 42.9
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 3.5e-46 189.5 287 42.2
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.3e-45 186.8 297 45.8
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 3.3e-44 183.0 235 53.2
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 4.3e-44 182.6 373 36.2
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.8e-43 179.9 272 43.4
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.1e-42 177.9 357 37.3
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.4e-42 177.6 236 47.0
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.4e-42 177.6 307 41.4
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.1e-42 176.4 283 41.7
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 6.8e-42 175.3 300 38.0
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 6.8e-42 175.3 165 56.4
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 6.4e-40 168.7 315 35.9
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.4e-39 167.5 296 43.6
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 1.4e-39 167.5 295 39.3
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.9e-39 167.2 304 38.5
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 3.2e-39 166.4 279 45.5
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 9.6e-36 154.8 252 39.7
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.6e-35 154.1 284 38.7
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.6e-33 146.7 313 36.1
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 5.8e-33 145.6 251 38.6
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 4.9e-32 142.5 165 52.7
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.9e-31 140.6 186 48.4
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.1e-30 137.1 224 43.3
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.3e-29 134.4 119 61.3
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.5e-28 131.0 277 36.5
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 9.6e-28 128.3 230 37.0
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 6.2e-27 125.6 305 35.4
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.0e-26 122.9 147 46.9
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 6.9e-26 122.1 294 32.7
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 3.2e-23 113.2 320 32.5
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 4.2e-23 112.8 294 33.7
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.5e-20 104.4 207 34.8
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.5e-20 104.4 83 65.1
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.3e-20 102.8 208 36.5
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 5.6e-20 102.4 208 36.5
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 9.0e-18 95.1 212 33.0
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 1.9e-15 87.4 83 56.6
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 2.5e-15 87.0 109 46.8
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.2e-15 86.7 176 34.7
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 7.1e-15 85.5 212 30.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.2e-14 84.7 317 30.3
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.6e-14 84.3 261 30.3
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.6e-14 84.3 232 32.8
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 7.9e-14 82.0 88 50.0
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.3e-13 81.3 101 45.5
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.7e-11 73.2 312 28.8


User provided reference genes

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