Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 2.4e-57 225.3 116 100.0
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 2.9e-47 191.8 116 85.3
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 2.5e-43 178.7 116 80.2
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 2.4e-41 172.2 116 75.9
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 2.4e-41 172.2 116 75.9
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 3.1e-41 171.8 116 75.0
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 1.2e-40 169.9 115 73.0
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 2.6e-40 168.7 115 75.7
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 4.5e-40 167.9 116 76.7
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 4.5e-40 167.9 116 76.7
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 1.7e-39 166.0 115 75.7
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 2.5e-38 162.2 115 72.2
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 2.1e-37 159.1 114 67.5
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 2.3e-36 155.6 117 65.0
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 2.3e-36 155.6 114 66.7
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 2.6e-35 152.1 115 68.7
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 1.3e-34 149.8 114 64.0
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 1.3e-34 149.8 115 67.8
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 6.3e-34 147.5 116 71.6
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 8.2e-34 147.1 98 74.5
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 8.2e-34 147.1 114 65.8
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 1.8e-33 146.0 116 69.8
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 2.4e-33 145.6 114 64.0
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 4.1e-33 144.8 116 66.4
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 9.1e-33 143.7 114 63.2
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 9.1e-33 143.7 121 62.8
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 1.2e-32 143.3 113 61.9
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 5.9e-32 141.0 120 65.8
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 1.0e-31 140.2 120 64.2
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 2.9e-31 138.7 115 66.1
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 2.9e-31 138.7 115 66.1
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 2.9e-31 138.7 115 65.2
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 5.0e-31 137.9 118 66.1
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 8.5e-31 137.1 114 60.5
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 2.5e-30 135.6 132 59.1
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 3.2e-30 135.2 114 61.4
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 3.2e-30 135.2 116 63.8
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 5.5e-30 134.4 114 59.6
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 1.6e-29 132.9 113 61.9
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 2.7e-29 132.1 116 59.5
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 2.7e-29 132.1 118 58.5
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 1.4e-28 129.8 123 61.8
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 2.3e-28 129.0 115 58.3
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 2.3e-28 129.0 117 59.8
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 3.0e-28 128.6 130 53.8
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 3.9e-28 128.3 115 55.7
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 6.7e-28 127.5 114 57.9
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 8.8e-28 127.1 117 58.1
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 1.1e-27 126.7 114 57.9
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 1.1e-27 126.7 99 66.7
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 1.5e-27 126.3 116 57.8
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 2.6e-27 125.6 114 58.8
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 2.6e-27 125.6 120 59.2
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 2.6e-27 125.6 120 59.2
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 4.4e-27 124.8 116 58.6
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 7.4e-27 124.0 114 63.2
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 9.7e-27 123.6 118 59.3
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 9.7e-27 123.6 114 58.8
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 1.3e-26 123.2 114 56.1
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 2.2e-26 122.5 118 58.5
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 4.8e-26 121.3 118 58.5
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 6.3e-26 120.9 115 58.3
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 1.1e-25 120.2 115 58.3
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 3.1e-25 118.6 114 57.0
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 1.6e-24 116.3 77 68.8
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 2.6e-24 115.5 112 55.4
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 5.9e-24 114.4 131 49.6
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 7.7e-24 114.0 73 71.2
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 1.3e-23 113.2 119 55.5
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 1.3e-23 113.2 119 55.5
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 1.7e-23 112.8 115 54.8
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 2.2e-23 112.5 99 62.6
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 2.9e-23 112.1 93 55.9
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 3.8e-23 111.7 118 55.1
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 5.0e-23 111.3 120 52.5
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 1.5e-22 109.8 114 53.5
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 1.9e-22 109.4 119 52.9
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 1.9e-22 109.4 116 50.9
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 3.2e-22 108.6 115 51.3
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 7.2e-22 107.5 110 49.1
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 9.4e-22 107.1 120 54.2
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 1.2e-21 106.7 114 52.6
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 2.1e-21 105.9 100 55.0
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 4.7e-21 104.8 117 51.3
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 6.1e-21 104.4 117 51.3
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 8.0e-21 104.0 116 51.7
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 8.0e-21 104.0 116 48.3
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 3.0e-20 102.1 116 52.6
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 2.2e-18 95.9 120 47.5
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 9.1e-17 90.5 114 45.6
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 1.2e-16 90.1 91 56.0
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 4.5e-16 88.2 115 46.1
vmacro08628 Vaccinium macrocarpon HOM05D007094 ORTHO05D008264 7.7e-16 87.4 78 55.1
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 1.0e-15 87.0 101 50.5
Hma1.2p1_0460F.1_g157640 Hydrangea macrophylla HOM05D007094 ORTHO05D008264 1.3e-15 86.7 110 49.1
Haze_25678 Corylus avellana HOM05D007094 ORTHO05D008264 1.7e-15 86.3 115 47.8
Peaxi162Scf00032g02018 Petunia axillaris HOM05D021104 ORTHO05D008264 1.7e-15 86.3 79 54.4
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 2.2e-15 85.9 117 46.2
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 6.5e-15 84.3 93 52.7
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 1.1e-14 83.6 100 44.0
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 5.5e-14 81.3 79 50.6
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 7.2e-14 80.9 116 42.2
Oeu032576.1 Olea europaea HOM05D007094 ORTHO05D008264 1.2e-13 80.1 50 74.0
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 2.7e-13 79.0 78 50.0
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 4.7e-13 78.2 87 51.7
PGSC0003DMG400004429 Solanum tuberosum HOM05D021104 ORTHO05D008264 3.0e-12 75.5 79 46.8
Hund21962 Selenicereus undatus HOM05D007094 ORTHO05D008264 2.0e-11 72.8 204 32.8
DCAR_029979 Daucus carota HOM05D007094 ORTHO05D008264 4.4e-11 71.6 65 49.2
Solyc01g008680.4 Solanum lycopersicum HOM05D021104 ORTHO05D008264 4.4e-11 71.6 79 46.8
Sopen01g004200 Solanum pennellii HOM05D021104 ORTHO05D008264 4.4e-11 71.6 79 46.8
Sed0018655 Sechium edule HOM05D007094 ORTHO05D008264 7.5e-11 70.9 110 48.2
Os07g0641800 Oryza sativa ssp. japonica HOM05D007094 ORTHO05D008264 9.8e-11 70.5 48 66.7
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 2.4e-09 65.9 44 68.2
AagrBONN_evm.TU.Sc2ySwM_368.1089 Anthoceros agrestis HOM05D007094 ORTHO05D008264 7.7e-08 60.8 127 37.8
C09p64640 Brassica napus HOM05D007094 ORTHO05D008264 4.2e-06 55.1 39 64.1


User provided reference genes

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