Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.2e-183 646.4 320 100.0
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 1.5e-138 496.5 344 78.8
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 4.9e-137 491.5 344 77.6
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 4.9e-137 491.5 344 77.6
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 3.0e-134 482.3 330 78.5
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 2.5e-133 479.2 344 75.6
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 2.4e-131 472.6 344 75.0
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 5.8e-130 468.0 344 73.8
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 5.8e-130 468.0 344 73.5
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 4.9e-129 464.9 344 74.1
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 3.2e-128 462.2 344 73.0
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 3.2e-128 462.2 345 73.0
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 2.7e-127 459.1 344 72.4
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 7.8e-127 457.6 328 74.7
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 7.8e-127 457.6 344 72.1
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 7.8e-127 457.6 357 71.1
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 1.0e-126 457.2 331 73.4
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 1.3e-126 456.8 344 72.4
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.7e-126 456.4 328 74.7
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 1.7e-126 456.4 357 70.6
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 2.3e-126 456.1 344 70.9
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 2.3e-126 456.1 344 71.2
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 3.9e-126 455.3 328 74.1
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 3.9e-126 455.3 344 73.3
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 1.9e-125 453.0 344 72.4
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 3.3e-125 452.2 333 73.6
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 3.3e-125 452.2 344 71.8
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 4.3e-125 451.8 344 71.8
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 5.6e-125 451.4 344 71.2
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 9.6e-125 450.7 344 71.2
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 9.6e-125 450.7 344 71.2
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 2.1e-124 449.5 344 70.3
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 2.1e-124 449.5 344 71.8
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 3.6e-124 448.7 331 71.0
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 6.2e-124 448.0 344 70.6
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 6.2e-124 448.0 344 70.6
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 6.2e-124 448.0 344 70.6
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 8.1e-124 447.6 288 83.0
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 8.1e-124 447.6 328 73.2
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 1.1e-123 447.2 344 70.9
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 1.4e-123 446.8 345 71.0
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 1.4e-123 446.8 344 71.2
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 1.8e-123 446.4 344 69.8
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 2.4e-123 446.0 328 72.3
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 2.4e-123 446.0 331 72.8
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 5.3e-123 444.9 344 70.9
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 6.9e-123 444.5 344 69.5
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.2e-122 443.7 302 79.5
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.2e-122 443.7 302 79.5
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.5e-122 443.4 357 68.6
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 2.0e-122 443.0 344 70.1
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 2.0e-122 443.0 344 69.8
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 5.8e-122 441.4 344 69.5
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 3.8e-121 438.7 328 71.0
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 4.9e-121 438.3 328 70.7
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 8.4e-121 437.6 344 69.2
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 8.4e-121 437.6 345 69.0
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 1.1e-120 437.2 344 69.5
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 1.1e-120 437.2 344 69.5
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 1.4e-120 436.8 328 70.7
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 1.4e-120 436.8 345 67.8
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 2.4e-120 436.0 344 68.6
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 2.4e-120 436.0 344 68.3
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 5.4e-120 434.9 344 68.9
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 7.1e-120 434.5 344 68.9
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 9.3e-120 434.1 328 70.1
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 9.3e-120 434.1 345 69.0
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 1.2e-119 433.7 344 68.9
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 1.6e-119 433.3 345 68.1
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 2.7e-119 432.6 328 69.8
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 2.7e-119 432.6 344 68.3
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 6.0e-119 431.4 344 68.3
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 6.0e-119 431.4 344 68.3
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 1.0e-118 430.6 346 68.2
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 1.8e-118 429.9 344 68.3
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 8.7e-118 427.6 344 68.0
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 1.1e-117 427.2 344 68.6
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 4.3e-117 425.2 348 67.0
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 7.4e-117 424.5 311 73.6
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 8.1e-116 421.0 345 67.5
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 8.1e-116 421.0 345 67.5
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 8.1e-116 421.0 345 67.5
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 8.1e-116 421.0 345 67.5
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 8.1e-116 421.0 302 75.2
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 1.1e-115 420.6 344 65.4
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.8e-115 419.9 372 64.2
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.8e-115 419.9 344 66.0
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 2.6e-114 416.0 344 66.0
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 3.4e-114 415.6 344 66.0
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 5.8e-114 414.8 327 68.2
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 5.8e-114 414.8 368 63.9
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 9.9e-114 414.1 344 66.0
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 1.7e-113 413.3 344 66.3
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 1.4e-112 410.2 338 66.3
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 4.2e-112 408.7 302 73.2
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 2.1e-111 406.4 332 67.8
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 2.7e-111 406.0 289 75.8
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-110 404.1 338 66.0
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-110 404.1 338 66.0
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 1.0e-110 404.1 346 64.2
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 6.7e-110 401.4 326 67.5
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 4.8e-108 395.2 307 69.4
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 1.8e-107 393.3 302 70.2
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.4e-107 392.9 350 64.6
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 2.5e-104 382.9 357 61.9
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 3.2e-104 382.5 345 63.2
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.5e-103 379.0 347 61.7
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 4.6e-103 378.6 345 61.4
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 1.5e-101 373.6 344 62.2
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 5.7e-101 371.7 299 67.9
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 9.6e-101 370.9 346 58.4
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 1.6e-100 370.2 280 72.9
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 4.8e-100 368.6 344 60.5
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 6.3e-100 368.2 344 59.0
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 9.7e-93 344.4 257 72.8
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 2.0e-90 336.7 285 67.4
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 6.1e-87 325.1 296 61.8
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 6.1e-87 325.1 343 53.1
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 8.2e-84 314.7 172 90.7
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 5.3e-83 312.0 262 68.3
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 1.7e-81 307.0 275 65.1
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 1.4e-80 303.9 173 88.4
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 2.7e-79 299.7 172 87.2
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 2.3e-78 296.6 281 58.0
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 2.0e-77 293.5 172 86.0
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 3.3e-77 292.7 172 84.9
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 5.3e-75 285.4 168 85.7
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 1.6e-74 283.9 172 82.0
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 5.0e-65 252.3 338 45.6
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 5.5e-64 248.8 137 88.3
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 4.7e-63 245.7 358 42.2
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 5.2e-62 242.3 163 76.7
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 3.4e-61 239.6 133 83.5
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 7.5e-61 238.4 172 71.5
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 2.8e-60 236.5 137 82.5
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 3.5e-58 229.6 330 41.5
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 3.8e-57 226.1 337 41.5
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.9e-56 223.8 219 61.6
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 7.5e-53 211.8 263 52.9
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 2.3e-49 200.3 367 35.7
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 1.6e-47 194.1 223 54.3
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 3.6e-39 166.4 116 75.9
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 4.7e-39 166.0 100 81.0
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 1.2e-37 161.4 102 79.4
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 3.3e-32 143.3 189 49.2
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 6.8e-30 135.6 117 65.8
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 1.7e-28 131.0 172 47.7
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 2.4e-27 127.1 75 80.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 2.7e-26 123.6 69 85.5
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 1.5e-24 117.9 116 58.6
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 1.5e-24 117.9 116 58.6
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 5.6e-24 115.9 93 61.3
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 6.2e-23 112.5 85 67.1
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 8.4e-20 102.1 74 66.2
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 1.2e-18 98.2 74 71.6
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 3.6e-15 86.7 41 97.6
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 4.0e-14 83.2 50 72.0
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.7e-10 70.5 39 84.6
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 2.3e-09 67.4 50 66.0


User provided reference genes

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