Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 1.6e-41 172.2 78 100.0
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 4.8e-38 160.6 78 92.3
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 1.2e-36 156.0 78 88.5
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 1.6e-36 155.6 78 87.2
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.6e-36 154.8 78 89.7
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 3.5e-36 154.5 78 89.7
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 8.5e-35 149.8 78 84.6
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 8.5e-35 149.8 79 86.1
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 1.1e-34 149.4 78 85.9
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 5.5e-34 147.1 76 82.9
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 5.5e-34 147.1 78 83.3
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 2.1e-33 145.2 79 83.5
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 3.6e-33 144.4 79 81.0
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 3.6e-33 144.4 79 81.0
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 4.7e-33 144.1 78 82.1
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 6.1e-33 143.7 78 82.1
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 6.1e-33 143.7 78 82.1
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 6.1e-33 143.7 80 81.2
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 8.0e-33 143.3 81 80.2
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 1.4e-32 142.5 79 78.5
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 2.3e-32 141.7 78 82.1
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 6.8e-32 140.2 78 76.9
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 6.8e-32 140.2 78 76.9
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 8.8e-32 139.8 79 79.7
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 1.2e-31 139.4 79 78.5
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 2.0e-31 138.7 79 78.5
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 3.4e-31 137.9 86 74.4
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 5.7e-31 137.1 78 75.6
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 7.5e-31 136.7 81 75.3
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 7.5e-31 136.7 81 75.3
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 9.8e-31 136.3 79 77.2
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 9.8e-31 136.3 79 78.5
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 9.8e-31 136.3 78 71.8
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 9.8e-31 136.3 72 83.3
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 2.2e-30 135.2 76 77.6
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 2.8e-30 134.8 78 73.1
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 4.8e-30 134.0 78 75.6
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 4.8e-30 134.0 78 74.4
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 1.1e-29 132.9 81 71.6
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 1.1e-29 132.9 78 73.1
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 1.4e-29 132.5 81 74.1
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 2.4e-29 131.7 78 71.8
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 3.1e-29 131.3 85 70.6
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 3.1e-29 131.3 80 76.2
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 9.1e-29 129.8 78 75.6
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 1.2e-28 129.4 83 75.9
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 1.6e-28 129.0 81 67.9
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.6e-28 129.0 86 69.8
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 2.0e-28 128.6 86 68.6
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 2.7e-28 128.3 80 73.8
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 7.7e-28 126.7 73 78.1
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 7.7e-28 126.7 79 72.2
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.3e-27 125.9 78 65.4
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 1.3e-27 125.9 78 70.5
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 2.9e-27 124.8 79 73.4
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 5.0e-27 124.0 78 70.5
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 5.0e-27 124.0 86 66.3
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 6.5e-27 123.6 83 65.1
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 8.5e-27 123.2 86 66.3
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 8.5e-27 123.2 86 66.3
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 8.5e-27 123.2 86 66.3
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 8.5e-27 123.2 86 66.3
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 1.1e-26 122.9 72 72.2
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 1.9e-26 122.1 79 70.9
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 1.9e-26 122.1 79 70.9
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 1.9e-26 122.1 78 69.2
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 2.5e-26 121.7 87 64.4
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 3.2e-26 121.3 81 71.6
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 4.2e-26 120.9 78 67.9
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 4.2e-26 120.9 85 65.9
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 4.2e-26 120.9 85 65.9
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 4.2e-26 120.9 85 65.9
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 5.5e-26 120.6 78 64.1
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 7.2e-26 120.2 81 70.4
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 9.4e-26 119.8 81 69.1
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 9.4e-26 119.8 81 69.1
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 9.4e-26 119.8 81 69.1
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 1.2e-25 119.4 81 70.4
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 2.7e-25 118.2 81 69.1
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 3.6e-25 117.9 81 70.4
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 6.1e-25 117.1 81 69.1
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 8.0e-25 116.7 81 69.1
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 3.0e-24 114.8 81 67.9
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 9.8e-23 109.8 80 57.5
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 1.7e-22 109.0 79 63.3
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 2.2e-22 108.6 71 71.8
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 3.7e-22 107.8 80 58.8
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 6.3e-22 107.1 81 56.8
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 8.0e-09 63.5 54 50.0
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 3.7e-06 54.7 59 44.1
MBI18_g28520_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 8.3e-06 53.5 42 54.8


User provided reference genes

Program Settings