Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 5.2e-42 174.1 96 100.0
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 1.1e-31 139.8 91 84.6
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 1.6e-30 136.0 91 82.4
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 3.0e-29 131.7 92 75.0
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 3.0e-29 131.7 91 78.0
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 5.0e-29 131.0 92 78.3
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 6.6e-29 130.6 92 78.3
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 6.6e-29 130.6 91 76.9
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 8.6e-29 130.2 92 77.2
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.6e-29 130.2 92 77.2
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.6e-29 130.2 92 77.2
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 8.6e-29 130.2 91 76.9
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.5e-28 129.4 91 75.8
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 3.3e-28 128.3 90 78.9
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 3.3e-28 128.3 91 76.9
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 3.3e-28 128.3 91 76.9
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 3.3e-28 128.3 92 76.1
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 3.3e-28 128.3 92 76.1
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 4.3e-28 127.9 91 73.6
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 1.2e-27 126.3 86 81.4
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 3.6e-27 124.8 89 73.0
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.7e-27 124.4 91 74.7
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 4.7e-27 124.4 90 75.6
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 6.2e-27 124.0 91 73.6
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 8.0e-27 123.6 90 73.3
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 8.0e-27 123.6 92 73.9
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.1e-26 123.2 87 74.7
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.1e-26 123.2 89 75.3
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.4e-26 122.9 89 74.2
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.8e-26 122.5 91 73.6
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.8e-26 122.5 91 73.6
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 1.8e-26 122.5 91 71.4
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 5.2e-26 120.9 91 74.7
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 5.2e-26 120.9 92 71.7
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 6.8e-26 120.6 89 70.8
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 1.2e-25 119.8 91 71.4
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 2.0e-25 119.0 91 70.3
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.4e-25 118.2 91 70.3
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 4.4e-25 117.9 90 71.1
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 5.8e-25 117.5 91 69.2
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 7.5e-25 117.1 87 77.0
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 7.5e-25 117.1 94 68.1
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 9.8e-25 116.7 94 68.1
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 9.8e-25 116.7 94 66.0
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 9.8e-25 116.7 89 69.7
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.3e-24 116.3 85 72.9
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 1.3e-24 116.3 91 69.2
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.3e-24 116.3 88 70.5
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 2.2e-24 115.5 91 68.1
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.9e-24 115.2 94 66.0
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 4.9e-24 114.4 94 62.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 4.9e-24 114.4 88 70.5
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 8.3e-24 113.6 94 63.8
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 8.3e-24 113.6 89 66.3
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 8.3e-24 113.6 89 66.3
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.4e-23 112.8 89 67.4
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 1.4e-23 112.8 94 61.7
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.9e-23 112.5 91 70.3
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.4e-23 112.1 80 75.0
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 2.4e-23 112.1 85 70.6
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 3.2e-23 111.7 91 70.3
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.2e-23 111.7 81 74.1
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 4.1e-23 111.3 87 72.4
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.1e-23 111.3 89 65.2
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 5.4e-23 110.9 89 69.7
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 5.4e-23 110.9 89 65.2
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 7.1e-23 110.5 89 66.3
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 7.1e-23 110.5 88 67.0
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 9.2e-23 110.2 89 68.5
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 9.2e-23 110.2 89 64.0
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 1.2e-22 109.8 91 65.9
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.2e-22 109.8 88 69.3
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 1.2e-22 109.8 93 66.7
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.6e-22 109.4 91 67.0
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 2.1e-22 109.0 89 67.4
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 2.1e-22 109.0 89 64.0
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 2.7e-22 108.6 88 64.8
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 2.7e-22 108.6 88 64.8
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 2.7e-22 108.6 90 66.7
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.6e-22 107.8 91 65.9
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 7.8e-22 107.1 90 65.6
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 7.8e-22 107.1 89 65.2
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 7.8e-22 107.1 90 65.6
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 1.0e-21 106.7 88 63.6
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 1.0e-21 106.7 88 63.6
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 1.0e-21 106.7 87 64.4
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 1.3e-21 106.3 87 67.8
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.7e-21 105.9 86 67.4
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 2.3e-21 105.5 94 58.5
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 2.3e-21 105.5 86 67.4
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 2.3e-21 105.5 88 64.8
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 3.0e-21 105.1 90 63.3
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 3.0e-21 105.1 91 65.9
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 5.1e-21 104.4 91 67.0
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 8.6e-21 103.6 89 66.3
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 1.1e-20 103.2 89 64.0
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 1.5e-20 102.8 89 65.2
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 1.9e-20 102.4 108 57.4
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 3.3e-20 101.7 91 62.6
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 4.3e-20 101.3 75 73.3
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 1.2e-19 99.8 84 61.9
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 2.1e-19 99.0 76 72.4
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 2.8e-19 98.6 89 59.6
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 2.8e-19 98.6 90 60.0
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.6e-19 98.2 89 55.1
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 4.7e-19 97.8 91 62.6
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 6.2e-19 97.4 89 62.9
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 8.1e-19 97.1 87 57.5
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 1.1e-18 96.7 90 60.0
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 1.8e-18 95.9 90 53.3
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 2.3e-18 95.5 89 61.8
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 3.1e-18 95.1 89 53.9
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 5.2e-18 94.4 86 59.3
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 5.2e-18 94.4 91 60.4
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.8e-18 94.0 91 60.4
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 6.8e-18 94.0 90 57.8
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 8.9e-18 93.6 92 54.3
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.2e-17 93.2 89 61.8
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 2.0e-17 92.4 87 60.9
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.0e-17 92.4 91 58.2
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 2.6e-17 92.0 90 58.9
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.6e-17 92.0 87 63.2
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 3.4e-17 91.7 81 64.2
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 4.4e-17 91.3 89 57.3
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 5.8e-17 90.9 87 59.8
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 5.8e-17 90.9 92 55.4
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 5.8e-17 90.9 90 57.8
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 9.9e-17 90.1 111 52.3
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 9.9e-17 90.1 111 52.3
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 9.9e-17 90.1 90 57.8
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.9e-17 90.1 87 52.9
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.9e-17 90.1 87 52.9
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 9.9e-17 90.1 87 52.9
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 1.3e-16 89.7 72 63.9
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 1.3e-16 89.7 90 56.7
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 6.4e-16 87.4 80 61.2
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 8.3e-16 87.0 90 55.6
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 1.1e-15 86.7 85 56.5
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.1e-15 86.7 94 52.1
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.4e-15 85.5 88 58.0
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 3.2e-15 85.1 86 52.3
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 5.4e-15 84.3 140 40.7
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 7.1e-15 84.0 93 52.7
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 9.2e-15 83.6 90 53.3
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 9.2e-15 83.6 90 54.4
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 3.5e-14 81.6 82 56.1
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 4.6e-14 81.3 87 49.4
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.0e-13 80.1 85 47.1
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.3e-13 79.7 90 50.0
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 3.0e-13 78.6 93 52.7
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.9e-13 78.2 98 46.9
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.1e-13 77.8 69 62.3
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 6.6e-13 77.4 48 83.3
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 6.6e-13 77.4 96 46.9
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 8.6e-13 77.0 109 46.8
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.1e-12 76.6 90 50.0
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.1e-12 76.6 67 62.7
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.5e-12 76.3 69 60.9
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.9e-12 75.9 69 60.9
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 4.3e-12 74.7 80 53.8
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 4.3e-12 74.7 73 57.5
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 4.3e-12 74.7 53 71.7
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 9.6e-12 73.6 86 47.7
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 2.1e-11 72.4 53 69.8
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 2.8e-11 72.0 83 48.2
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 2.8e-11 72.0 77 50.6
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 3.6e-11 71.6 92 45.7
TPR.G23220 Trifolium pratense HOM05D003660 ORTHO05D003415 2.4e-10 68.9 63 63.5
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 3.1e-10 68.6 78 56.4
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 4.0e-10 68.2 55 65.5
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 4.0e-10 68.2 87 43.7
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 5.2e-10 67.8 68 54.4
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 8.9e-10 67.0 86 43.0
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 1.2e-09 66.6 87 43.7
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 1.2e-09 66.6 54 63.0
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 2.0e-09 65.9 87 42.5
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 2.0e-09 65.9 108 38.0
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 3.4e-09 65.1 86 44.2
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 7.6e-09 63.9 87 42.5
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 1.3e-08 63.2 88 44.3
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 1.3e-08 63.2 50 68.0
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 1.3e-08 63.2 91 45.1
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 1.7e-08 62.8 87 41.4
QL07p037620 Quercus lobata HOM05D003660 ORTHO05D003415 1.9e-07 59.3 72 51.4
EL10Ac7g16326 Beta vulgaris HOM05D003660 ORTHO05D003415 7.1e-07 57.4 42 69.0
Pp3c9_5580 Physcomitrium patens HOM05D003660 ORTHO05D003415 9.3e-07 57.0 81 45.7
Pp3c15_12320 Physcomitrium patens HOM05D003660 ORTHO05D003415 1.6e-06 56.2 81 42.0


User provided reference genes

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