Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 2.6e-185 652.5 494 100.0
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 6.4e-112 408.7 495 78.2
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 2.2e-80 303.9 490 69.0
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.6e-78 297.7 493 69.6
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 2.3e-77 293.9 492 69.3
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.8e-75 286.2 492 68.5
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 7.7e-73 278.9 496 59.7
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.7e-59 234.6 505 50.1
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 1.5e-55 221.5 502 56.6
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.8e-53 214.5 559 53.5
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 4.9e-51 206.5 495 56.0
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.4e-50 204.1 543 40.0
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 3.1e-50 203.8 496 54.0
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 1.6e-49 201.4 503 58.1
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 1.3e-48 198.4 498 57.0
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 6.6e-48 196.1 499 52.5
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 8.6e-48 195.7 496 52.0
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.9e-47 194.5 509 53.4
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 3.3e-47 193.7 505 57.0
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 7.3e-47 192.6 501 51.9
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 9.5e-47 192.2 375 38.4
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 9.5e-47 192.2 500 57.0
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 1.8e-45 188.0 501 57.1
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.1e-45 187.2 289 47.8
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 5.2e-45 186.4 512 42.4
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 5.2e-45 186.4 499 52.7
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 1.2e-44 185.3 368 37.5
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 5.8e-44 183.0 492 54.1
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 9.8e-44 182.2 497 54.1
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 9.8e-44 182.2 498 57.0
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 2.2e-43 181.0 495 55.2
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 3.7e-43 180.3 496 55.8
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 1.1e-42 178.7 502 47.0
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.9e-42 177.9 521 53.4
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 7.0e-42 176.0 492 55.3
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 7.0e-42 176.0 516 53.5
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 1.2e-41 175.3 513 54.2
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 1.0e-40 172.2 501 51.1
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 1.7e-40 171.4 504 54.0
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.7e-40 171.4 502 45.6
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 3.9e-40 170.2 499 55.7
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 3.9e-40 170.2 304 40.8
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 3.9e-40 170.2 304 40.8
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 3.9e-40 170.2 499 55.1
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 5.0e-40 169.9 493 56.6
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 5.0e-40 169.9 491 55.4
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 6.6e-40 169.5 496 56.0
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 7.3e-39 166.0 363 35.8
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 9.5e-39 165.6 495 54.7
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 1.2e-38 165.2 511 47.7
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 1.8e-37 161.4 290 40.3
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 4.0e-37 160.2 497 57.1
MD11G1169000 Malus domestica HOM05D007535 ORTHO05D008520 4.0e-37 160.2 149 63.8
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 5.2e-37 159.8 500 55.6
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 6.8e-37 159.5 457 59.5
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 2.6e-36 157.5 500 46.6
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 2.6e-36 157.5 506 48.0
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 3.4e-36 157.1 546 40.5
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 9.8e-36 155.6 508 41.1
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 1.3e-35 155.2 500 46.6
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 1.7e-35 154.8 507 54.6
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 6.4e-35 152.9 494 40.1
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 2.4e-34 151.0 496 48.0
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 3.2e-34 150.6 569 27.4
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 3.2e-34 150.6 504 42.3
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 7.0e-34 149.4 505 43.8
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.5e-33 147.1 354 71.2
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 6.0e-33 146.4 502 47.0
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 1.0e-32 145.6 504 41.1
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 2.3e-32 144.4 462 51.9
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 1.5e-31 141.7 491 52.7
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 1.9e-31 141.4 528 44.5
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 7.3e-31 139.4 497 46.7
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 1.6e-30 138.3 494 51.2
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 6.2e-30 136.3 512 52.1
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 1.1e-29 135.6 495 53.3
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 2.6e-28 131.0 226 40.7
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 5.8e-28 129.8 507 53.1
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 3.7e-27 127.1 295 57.6
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 3.7e-27 127.1 305 63.3
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 4.1e-26 123.6 496 50.6
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 9.2e-26 122.5 493 50.9
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 6.0e-25 119.8 359 42.1
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 2.3e-24 117.9 502 50.6
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 1.8e-21 108.2 504 44.2
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 4.4e-20 103.6 149 63.1
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 7.6e-20 102.8 143 44.8
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 9.9e-20 102.4 410 55.9
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 6.4e-19 99.8 494 49.6
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 2.7e-17 94.4 283 70.0
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 7.8e-17 92.8 508 48.8
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 4.3e-15 87.0 492 49.2
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 1.3e-14 85.5 365 47.9
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 4.8e-14 83.6 495 46.3
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 6.2e-14 83.2 498 47.8
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 8.1e-14 82.8 493 49.3
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 4.4e-12 77.0 290 69.0
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 4.4e-12 77.0 52 73.1
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 1.7e-11 75.1 273 50.5
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 2.9e-11 74.3 274 67.9
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 2.9e-11 74.3 274 67.9
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 4.9e-11 73.6 274 67.9
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 6.4e-11 73.2 231 38.5
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 1.1e-10 72.4 274 67.5
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 3.2e-10 70.9 49 69.4
COL.COLO4_22633 Corchorus olitorius HOM05D007535 ORTHO05D008520 7.1e-10 69.7 187 32.6
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 1.6e-09 68.6 274 70.4
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 1.6e-09 68.6 274 70.4
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 2.7e-09 67.8 299 66.2
Actinidia24231 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.1e-07 62.4 185 27.6
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 1.5e-07 62.0 492 48.6
Mapoly0097s0057 Marchantia polymorpha HOM05D022173 ORTHO05D008520 3.3e-07 60.8 119 33.6
CANSAT78G2361 Cannabis sativa HOM05D000107 ORTHO05D000062 1.6e-06 58.5 41 68.3
CSS0011293 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 4.8e-06 57.0 42 69.0


User provided reference genes

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