Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 2.3e-171 605.5 311 100.0
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 1.5e-146 523.1 311 85.9
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 5.6e-130 468.0 307 77.9
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 2.0e-119 433.0 300 76.3
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 4.5e-119 431.8 318 72.0
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 6.7e-115 417.9 312 70.2
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.9e-114 416.4 312 70.5
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 3.4e-111 405.6 316 69.9
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.4e-109 400.2 300 69.7
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 2.5e-109 399.4 300 69.3
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 3.2e-109 399.1 319 67.1
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 5.5e-109 398.3 317 66.6
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 5.5e-109 398.3 300 69.0
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 7.2e-109 397.9 311 66.9
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 7.2e-109 397.9 301 69.8
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.0e-107 392.5 299 68.2
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 6.7e-107 391.3 315 69.2
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 8.8e-107 391.0 315 65.4
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 4.8e-105 385.2 294 68.0
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 8.2e-105 384.4 310 64.5
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 6.9e-104 381.3 311 64.3
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 9.1e-104 380.9 311 64.3
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 2.0e-103 379.8 295 65.1
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 7.7e-103 377.9 323 63.2
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 1.7e-102 376.7 290 67.9
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 3.6e-100 369.0 312 62.8
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 6.7e-99 364.8 319 60.8
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 8.8e-99 364.4 303 63.7
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 2.0e-98 363.2 282 64.2
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 4.4e-98 362.1 283 63.6
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 3.7e-97 359.0 315 61.0
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 1.2e-95 354.0 309 60.2
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 1.5e-95 353.6 301 63.1
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 2.0e-95 353.2 308 61.4
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 2.0e-95 353.2 328 57.9
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 3.5e-95 352.4 297 61.6
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.0e-94 350.9 299 61.2
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 3.8e-94 349.0 287 62.7
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 1.5e-93 347.1 295 62.4
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 9.4e-93 344.4 285 65.3
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 4.7e-92 342.0 301 61.1
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 6.1e-92 341.7 296 61.1
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 1.8e-91 340.1 300 61.0
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 2.3e-91 339.7 298 61.7
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 2.3e-91 339.7 293 60.4
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 3.0e-91 339.3 293 60.1
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 6.7e-91 338.2 263 66.2
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 6.7e-91 338.2 298 61.4
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 2.8e-89 332.8 296 58.8
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 4.8e-89 332.0 296 59.1
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 4.8e-89 332.0 268 62.7
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 6.3e-89 331.6 331 55.9
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 8.2e-89 331.3 283 59.7
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.1e-88 330.9 300 58.3
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.4e-88 330.5 300 58.0
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 2.4e-88 329.7 301 57.1
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 3.1e-88 329.3 300 59.3
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 4.1e-88 328.9 295 59.3
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 5.3e-88 328.6 296 57.8
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 9.1e-88 327.8 295 58.6
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 4.5e-87 325.5 293 59.0
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 1.7e-86 323.6 281 60.9
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 2.9e-86 322.8 267 60.3
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.5e-85 319.7 304 57.2
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 9.4e-85 317.8 282 60.6
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 1.2e-84 317.4 267 62.5
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 6.1e-84 315.1 268 59.7
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 3.4e-82 309.3 292 56.8
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 4.8e-81 305.4 277 57.4
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-80 304.3 283 56.2
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 4.1e-80 302.4 305 53.4
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 5.3e-80 302.0 315 57.1
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 7.0e-80 301.6 271 59.4
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 2.0e-79 300.1 365 48.5
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 7.7e-79 298.1 262 60.3
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 1.7e-78 297.0 301 55.8
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 2.2e-78 296.6 281 58.0
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 4.2e-77 292.4 302 54.0
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 5.5e-77 292.0 299 54.2
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 3.4e-74 282.7 420 41.7
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 1.6e-71 273.9 313 49.2
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 1.0e-70 271.2 306 50.0
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 6.6e-70 268.5 308 45.8
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 5.5e-69 265.4 309 47.9
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 9.5e-69 264.6 300 47.3
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.8e-67 260.4 298 47.7
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 1.5e-66 257.3 288 47.9
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 3.7e-65 252.7 264 53.0
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.4e-64 250.8 264 50.0
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.2e-63 247.7 269 51.3
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.5e-61 240.7 267 50.2
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 3.1e-59 233.0 153 75.8
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.2e-57 226.9 158 71.5
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 2.4e-56 223.4 192 60.9
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 9.2e-56 221.5 201 55.7
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 2.7e-55 219.9 294 43.9
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.5e-55 219.5 131 80.2
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 1.9e-53 213.8 285 43.5
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 2.5e-53 213.4 230 52.6
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.6e-53 212.2 153 68.6
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.3e-51 206.8 213 55.4
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.2e-51 205.7 269 48.7
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.0e-46 191.4 269 45.4
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 5.1e-46 189.1 284 39.8
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 8.9e-43 178.3 180 53.3
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.4e-40 170.2 146 68.5
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 7.1e-40 168.7 101 78.2
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.6e-39 167.5 215 47.4
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 6.0e-39 165.6 278 38.1
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 5.6e-37 159.1 166 49.4
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 1.1e-35 154.8 146 56.8
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 6.8e-35 152.1 162 56.2
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.2e-34 151.4 100 72.0
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 5.8e-34 149.1 131 59.5
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 3.5e-31 139.8 138 55.8
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 6.6e-30 135.6 87 72.4
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 3.3e-29 133.3 107 64.5
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.6e-28 131.0 81 77.8
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 3.5e-23 113.2 142 47.2
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 5.8e-18 95.9 72 62.5
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 1.4e-16 91.3 82 59.8
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.4e-16 90.5 98 60.2
FvH4_2g10341 Fragaria vesca HOM05D005386 ORTHO05D006981 4.2e-16 89.7 71 67.6
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 7.9e-15 85.5 82 58.5
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 5.6e-13 79.3 59 71.2
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 9.6e-13 78.6 46 84.8
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 5.3e-11 72.8 54 63.0
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.3e-11 72.8 91 44.0
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 2.6e-10 70.5 178 29.2
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 7.6e-10 68.9 104 45.2
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 1.9e-08 64.3 68 55.9
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 2.5e-08 63.9 49 61.2
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 2.5e-08 63.9 90 35.6
Ciclev10029903m.g Citrus clementina HOM05D005386 ORTHO05D006981 7.1e-08 62.4 60 56.7
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 9.3e-08 62.0 58 58.6
arahy.Tifrunner.gnm1.ann1.M13D0Y Arachis hypogaea HOM05D005386 ORTHO05D006981 1.8e-06 57.8 41 70.7
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 1.8e-06 57.8 226 25.2
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 5.1e-06 56.2 63 50.8


User provided reference genes

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