Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 1.1e-95 353.2 175 100.0
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 4.5e-76 288.1 178 80.3
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 4.2e-74 281.6 178 79.2
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 2.6e-63 245.7 174 73.6
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.6e-63 245.7 174 73.6
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.7e-63 244.6 174 73.6
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 7.4e-63 244.2 174 73.6
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.0e-59 233.8 178 65.7
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 8.5e-59 230.7 169 67.5
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 1.5e-58 229.9 178 67.4
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 3.6e-57 225.3 172 63.4
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 3.6e-57 225.3 172 65.1
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 1.0e-56 223.8 177 65.0
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 1.2e-55 220.3 177 62.7
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 2.0e-55 219.5 170 64.7
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 3.4e-55 218.8 171 64.9
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 2.2e-54 216.1 175 66.9
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 6.3e-54 214.5 169 65.7
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.8e-53 213.0 169 65.7
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.4e-53 212.6 170 62.9
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 2.4e-53 212.6 180 61.7
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.2e-52 210.3 169 61.5
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.6e-52 209.9 166 66.3
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 3.5e-52 208.8 174 63.8
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 3.5e-52 208.8 171 62.6
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 7.7e-52 207.6 172 62.8
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 1.0e-51 207.2 167 61.7
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 1.7e-51 206.5 171 62.0
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.2e-51 206.1 178 60.1
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 2.9e-51 205.7 170 62.9
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 2.9e-51 205.7 169 64.5
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 8.5e-51 204.1 165 61.2
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 1.5e-50 203.4 179 63.7
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 1.9e-50 203.0 173 61.3
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 4.2e-50 201.8 172 61.0
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 5.5e-50 201.4 172 57.6
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 5.5e-50 201.4 172 57.6
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 5.5e-50 201.4 173 60.1
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 9.4e-50 200.7 181 60.2
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.2e-49 200.3 177 56.5
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 2.1e-49 199.5 179 62.0
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 2.1e-49 199.5 172 57.6
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 3.6e-49 198.7 170 62.9
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 3.6e-49 198.7 169 62.1
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.3e-48 196.1 172 58.1
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 3.0e-48 195.7 174 59.2
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 2.0e-47 193.0 174 60.9
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 2.0e-47 193.0 173 59.5
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 4.4e-47 191.8 170 58.2
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 7.5e-47 191.0 171 59.1
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 9.8e-47 190.7 166 61.4
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.3e-46 190.3 176 61.4
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 4.9e-46 188.3 177 58.2
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 1.4e-45 186.8 182 53.3
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 2.4e-45 186.0 179 57.5
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 2.4e-45 186.0 169 59.2
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 3.1e-45 185.7 181 54.1
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.1e-45 185.7 181 57.5
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 4.1e-45 185.3 175 57.1
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 4.1e-45 185.3 176 56.8
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 7.0e-45 184.5 168 57.7
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 1.2e-44 183.7 168 57.1
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 2.0e-44 183.0 176 60.2
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.0e-44 183.0 175 54.9
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 2.0e-44 183.0 170 57.6
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 2.7e-44 182.6 181 55.2
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 3.5e-44 182.2 179 55.9
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 4.5e-44 181.8 176 54.5
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 4.5e-44 181.8 172 55.8
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 5.9e-44 181.4 179 54.7
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 1.0e-43 180.6 181 53.6
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 3.8e-43 178.7 193 51.3
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 6.6e-43 177.9 168 56.5
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 6.6e-43 177.9 169 55.0
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 2.5e-42 176.0 169 55.6
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.3e-42 175.6 179 53.1
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 5.6e-42 174.9 177 52.5
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 5.6e-42 174.9 166 53.6
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 9.5e-42 174.1 171 52.6
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 1.6e-41 173.3 177 52.5
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 1.6e-41 173.3 169 56.2
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 4.7e-41 171.8 172 55.2
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 4.0e-40 168.7 168 52.4
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 5.7e-39 164.9 178 51.1
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 7.5e-39 164.5 185 49.2
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 9.8e-39 164.1 179 53.6
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.1e-37 160.6 172 49.4
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 3.2e-37 159.1 176 48.9
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 5.4e-37 158.3 167 50.9
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 1.6e-36 156.8 174 50.6
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 2.7e-36 156.0 186 47.3
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 3.5e-36 155.6 182 49.5
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.7e-35 153.3 169 52.1
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 6.6e-35 151.4 180 48.9
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.5e-34 150.2 185 48.1
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 1.9e-34 149.8 177 48.6
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 3.3e-34 149.1 181 45.9
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.3e-34 149.1 170 45.3
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.3e-34 149.1 170 45.3
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 7.3e-34 147.9 166 47.6
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 9.5e-34 147.5 166 48.2
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.2e-33 147.1 132 57.6
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.8e-33 146.0 159 50.9
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 2.8e-33 146.0 177 45.8
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 6.2e-33 144.8 177 45.8
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 6.2e-33 144.8 125 60.0
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 1.4e-32 143.7 165 47.3
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 8.9e-32 141.0 157 51.0
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 2.0e-31 139.8 177 45.2
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 2.6e-31 139.4 171 46.8
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 3.4e-31 139.0 177 44.1
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 3.4e-31 139.0 177 46.3
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 9.8e-31 137.5 177 45.2
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 4.9e-30 135.2 175 43.4
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 1.4e-29 133.7 177 44.6
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.9e-29 133.3 177 44.1
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.9e-29 133.3 175 44.0
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 3.2e-29 132.5 171 45.0
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 4.1e-29 132.1 175 43.4
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 5.4e-29 131.7 175 43.4
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 5.4e-29 131.7 120 55.0
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 7.0e-29 131.3 175 43.4
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 9.2e-29 131.0 175 43.4
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 1.2e-28 130.6 169 47.9
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 2.0e-28 129.8 177 44.1
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 2.7e-28 129.4 175 42.9
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 7.8e-28 127.9 175 42.9
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 7.8e-28 127.9 175 42.9
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.3e-27 126.3 175 41.7
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 3.0e-27 125.9 175 42.3
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 3.0e-27 125.9 116 54.3
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 1.5e-26 123.6 141 46.8
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.8e-25 119.4 135 48.9
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 3.1e-24 115.9 94 66.0
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 5.8e-23 111.7 114 47.4
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.1e-20 103.2 87 59.8
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 5.1e-19 98.6 165 37.6
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 1.5e-18 97.1 184 34.2
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.5e-18 96.3 100 52.0
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.6e-17 93.6 202 34.7
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 4.1e-13 79.0 173 32.9
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 5.4e-13 78.6 166 34.3
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 3.9e-11 72.4 203 29.1
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 1.5e-10 70.5 59 61.0
Os02g0535300 Oryza sativa ssp. japonica HOM05D005110 ORTHO05D006074 1.9e-10 70.1 188 29.8
A10p18400 Brassica napus HOM05D005110 ORTHO05D006074 6.4e-06 55.1 52 53.8


User provided reference genes

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