Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 4.9e-97 357.8 184 100.0
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 5.0e-86 321.2 184 89.7
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 3.5e-79 298.5 181 80.7
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 7.8e-79 297.4 184 79.3
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.7e-78 296.2 184 78.8
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 3.0e-78 295.4 184 77.7
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 5.1e-78 294.7 185 80.0
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 8.6e-78 293.9 181 79.0
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.9e-77 292.7 185 79.5
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 5.6e-77 291.2 181 76.8
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.6e-76 289.7 182 77.5
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 3.6e-76 288.5 184 77.2
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 3.6e-76 288.5 181 77.3
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 4.7e-76 288.1 181 75.1
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 4.7e-76 288.1 182 78.0
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.4e-75 286.6 184 75.5
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 1.4e-75 286.6 182 74.7
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 1.4e-75 286.6 182 78.0
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 1.8e-75 286.2 182 77.5
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 4.0e-75 285.0 184 72.8
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 5.2e-75 284.6 182 76.4
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 8.9e-75 283.9 184 75.0
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 8.9e-75 283.9 183 74.9
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 1.5e-74 283.1 184 74.5
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 1.5e-74 283.1 184 74.5
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.5e-74 283.1 182 76.4
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 2.0e-74 282.7 185 75.1
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 3.4e-74 282.0 184 72.8
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 4.4e-74 281.6 182 73.1
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 7.6e-74 280.8 184 75.5
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 1.3e-73 280.0 184 73.9
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.7e-73 279.6 183 72.7
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.7e-73 279.6 183 72.7
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.7e-73 278.5 184 72.8
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 8.3e-73 277.3 184 73.4
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 8.3e-73 277.3 184 73.4
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 8.3e-73 277.3 184 73.4
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 1.1e-72 276.9 178 74.7
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 1.1e-72 276.9 178 74.7
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 1.1e-72 276.9 183 72.7
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 1.4e-72 276.6 184 71.7
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 1.9e-72 276.2 183 73.2
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.9e-72 276.2 184 73.4
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.9e-72 276.2 184 73.9
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.9e-72 276.2 181 72.9
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 2.4e-72 275.8 182 73.6
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 4.1e-72 275.0 184 73.4
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 4.1e-72 275.0 184 71.7
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 7.1e-72 274.2 181 72.4
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 9.2e-72 273.9 179 74.9
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 9.2e-72 273.9 185 72.4
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.2e-71 273.5 184 72.3
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 1.2e-71 273.5 182 73.6
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 1.2e-71 273.5 178 74.2
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 3.5e-71 271.9 179 74.9
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 4.6e-71 271.6 179 72.6
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 6.0e-71 271.2 185 70.8
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 1.0e-70 270.4 182 69.8
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 1.3e-70 270.0 182 72.5
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.3e-70 270.0 176 73.3
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 1.3e-70 270.0 185 71.4
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 1.7e-70 269.6 177 75.7
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 3.0e-70 268.9 164 78.7
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 3.9e-70 268.5 182 71.4
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.9e-70 268.5 180 71.1
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 5.1e-70 268.1 182 73.1
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 6.6e-70 267.7 179 72.1
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 8.6e-70 267.3 176 72.7
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.1e-69 266.9 182 71.4
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 1.5e-69 266.5 180 69.4
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 1.9e-69 266.2 182 71.4
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 2.5e-69 265.8 183 69.9
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 2.5e-69 265.8 182 70.9
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 7.3e-69 264.2 181 70.7
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 3.6e-68 261.9 183 68.9
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 1.1e-67 260.4 182 68.1
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.8e-67 259.6 180 68.9
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 1.8e-67 259.6 181 69.1
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 4.0e-67 258.5 178 69.1
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 6.8e-67 257.7 178 69.7
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 8.9e-67 257.3 183 66.7
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 8.9e-67 257.3 178 69.7
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 8.9e-67 257.3 182 68.1
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 8.9e-67 257.3 178 68.0
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 2.0e-66 256.1 180 68.3
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 2.6e-66 255.8 180 69.4
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 1.3e-65 253.4 168 72.6
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 2.2e-65 252.7 182 65.9
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 3.8e-65 251.9 171 71.3
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 3.8e-65 251.9 182 64.3
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.1e-64 250.4 176 67.0
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 1.1e-64 250.4 182 65.9
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 1.4e-64 250.0 184 66.8
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 4.2e-64 248.4 182 67.0
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 2.3e-62 242.7 182 63.7
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 2.5e-61 239.2 183 62.8
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.3e-60 236.9 193 63.7
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 3.2e-56 222.2 184 58.7
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 2.1e-55 219.5 178 59.6
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.3e-54 216.9 202 55.9
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.9e-53 213.0 201 54.7
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.3e-53 212.2 194 56.2
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 7.6e-50 201.1 137 70.1
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 7.6e-50 201.1 158 65.8
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 2.2e-49 199.5 158 64.6
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.6e-47 191.8 142 66.2
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 5.1e-46 188.3 175 54.3
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 3.3e-45 185.7 116 79.3
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 2.2e-41 172.9 106 76.4
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 7.9e-39 164.5 107 75.7
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 1.8e-38 163.3 185 44.9
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 5.7e-37 158.3 178 46.1
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 7.4e-37 157.9 169 47.9
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 2.6e-34 149.4 175 44.0
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 3.2e-32 142.5 181 42.0
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 4.2e-32 142.1 188 42.6
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 9.3e-32 141.0 183 42.6
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 3.9e-30 135.6 93 67.7
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 9.0e-27 124.4 160 40.0
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.0e-26 123.2 95 60.0
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.1e-23 113.2 179 39.1
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.5e-21 107.1 75 69.3
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.9e-17 92.8 93 49.5
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 9.1e-11 71.2 71 46.5
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 1.5e-08 63.9 162 29.6
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 1.5e-08 63.9 162 29.6
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 1.6e-07 60.5 188 23.9
HanXRQChr14g0456011 Helianthus annuus HOM05D003111 ORTHO05D003502 6.7e-06 55.1 146 24.0


User provided reference genes

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