Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 1.7e-67 259.2 134 100.0
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 2.7e-52 208.8 134 79.1
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 1.3e-51 206.5 134 78.4
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 1.7e-51 206.1 134 75.4
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 5.0e-51 204.5 134 80.6
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 3.2e-50 201.8 134 76.9
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 4.2e-50 201.4 134 76.1
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 5.5e-50 201.1 134 76.9
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 2.7e-49 198.7 134 74.6
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 3.6e-49 198.4 134 78.4
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 8.0e-49 197.2 133 76.7
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 1.0e-48 196.8 134 75.4
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 1.4e-48 196.4 134 75.4
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.4e-48 196.4 134 76.9
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 2.3e-48 195.7 134 79.1
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 2.3e-48 195.7 134 75.4
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 3.0e-48 195.3 134 76.1
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 3.0e-48 195.3 134 78.4
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 4.0e-48 194.9 134 73.1
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 4.0e-48 194.9 134 73.9
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 5.2e-48 194.5 134 73.9
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 6.8e-48 194.1 134 72.4
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 6.8e-48 194.1 134 75.4
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 8.8e-48 193.7 134 76.9
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 1.5e-47 193.0 134 73.9
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 2.0e-47 192.6 134 73.9
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 2.6e-47 192.2 134 72.4
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 2.6e-47 192.2 134 76.9
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 3.4e-47 191.8 134 73.9
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 3.4e-47 191.8 132 75.0
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 5.7e-47 191.0 138 75.4
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.8e-47 190.3 138 75.4
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.8e-47 190.3 138 75.4
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.8e-47 190.3 138 75.4
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 9.8e-47 190.3 134 75.4
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 1.3e-46 189.9 134 73.1
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.3e-46 189.9 134 75.4
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 1.3e-46 189.9 134 73.9
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.3e-46 189.9 134 73.1
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 1.7e-46 189.5 135 73.3
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.2e-46 189.1 138 74.6
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 2.2e-46 189.1 134 72.4
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.8e-46 188.7 134 74.6
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 2.8e-46 188.7 134 74.6
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.7e-46 188.3 138 74.6
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.7e-46 188.3 138 74.6
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 4.9e-46 188.0 135 72.6
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 4.9e-46 188.0 134 73.1
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 6.3e-46 187.6 134 70.9
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 1.8e-45 186.0 128 74.2
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 5.4e-45 184.5 138 74.6
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.4e-45 184.5 138 74.6
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.0e-45 184.1 138 72.5
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 7.0e-45 184.1 134 71.6
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 9.1e-45 183.7 134 71.6
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 9.1e-45 183.7 134 73.1
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 9.1e-45 183.7 134 70.1
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 1.2e-44 183.3 134 73.1
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 1.2e-44 183.3 134 71.6
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 1.2e-44 183.3 134 72.4
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 1.6e-44 183.0 134 72.4
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 2.0e-44 182.6 134 73.1
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 2.7e-44 182.2 134 74.6
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.5e-44 181.8 138 71.7
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 3.5e-44 181.8 134 68.7
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 3.5e-44 181.8 134 68.7
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 5.9e-44 181.0 134 67.9
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 7.7e-44 180.6 108 86.1
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 1.0e-43 180.3 134 71.6
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.0e-43 180.3 134 71.6
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.0e-43 180.3 134 71.6
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 1.3e-43 179.9 134 71.6
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 1.3e-43 179.9 134 69.4
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 2.3e-43 179.1 113 77.9
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 2.3e-43 179.1 134 70.1
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 3.8e-43 178.3 136 69.1
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 3.8e-43 178.3 134 67.2
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 6.6e-43 177.6 115 78.3
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 8.6e-43 177.2 135 67.4
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.5e-42 176.4 134 64.9
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.5e-42 176.4 134 67.2
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 2.5e-42 175.6 134 65.7
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 5.6e-42 174.5 136 67.6
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 7.2e-42 174.1 134 71.6
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 9.5e-42 173.7 125 72.0
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 9.5e-42 173.7 134 67.9
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 2.8e-41 172.2 134 64.2
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 4.7e-41 171.4 128 67.2
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 6.1e-41 171.0 134 63.4
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 1.0e-40 170.2 115 75.7
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 1.4e-40 169.9 120 70.8
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 1.4e-40 169.9 113 75.2
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 1.8e-40 169.5 138 67.4
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 2.3e-40 169.1 137 69.3
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 3.0e-40 168.7 113 76.1
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 3.0e-40 168.7 113 76.1
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 3.0e-40 168.7 113 76.1
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 3.0e-40 168.7 113 76.1
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 4.0e-40 168.3 120 70.0
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 4.0e-40 168.3 134 65.7
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 5.2e-40 167.9 132 66.7
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 1.2e-39 166.8 134 65.7
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 5.7e-39 164.5 121 71.1
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 5.7e-39 164.5 134 63.4
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 7.5e-39 164.1 134 67.2
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 9.8e-39 163.7 124 66.9
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 1.3e-38 163.3 107 77.6
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 4.1e-37 158.3 124 65.3
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 9.2e-37 157.1 113 69.9
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 3.5e-36 155.2 134 59.7
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 3.5e-36 155.2 134 62.7
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 5.9e-36 154.5 132 62.1
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 7.8e-36 154.1 90 82.2
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 7.8e-36 154.1 90 81.1
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.3e-35 153.3 134 58.2
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 1.1e-34 150.2 116 68.1
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.9e-34 149.4 124 66.1
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 3.3e-34 148.7 134 61.9
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 9.5e-34 147.1 114 64.9
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.1e-33 146.0 115 67.0
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 8.0e-33 144.1 100 72.0
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 1.2e-31 140.2 124 62.1
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 2.0e-31 139.4 134 59.0
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 4.9e-30 134.8 120 65.0
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 4.9e-30 134.8 135 57.0
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 7.8e-28 127.5 112 60.7
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.9e-26 122.9 93 69.9
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 3.2e-21 105.5 110 51.8
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.4e-21 104.8 57 86.0
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 8.6e-19 97.4 111 47.7
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 8.6e-19 97.4 90 55.6
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 1.1e-18 97.1 107 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 4.3e-18 95.1 91 51.6
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 5.8e-15 84.7 76 60.5
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 7.6e-15 84.3 116 43.1
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.4e-13 79.3 62 66.1
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 4.6e-12 75.1 126 39.7
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 2.3e-11 72.8 106 40.6
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 3.1e-08 62.4 82 48.8
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 8.9e-08 60.8 68 51.5
Dinv25304 Davidia involucrata HOM05D000009 ORTHO05D000008 2.2e-06 56.2 54 57.4
PRCOL_00001894 Prasinoderma coloniale HOM05D005499 ORTHO05D006666 8.4e-06 54.3 73 38.4


User provided reference genes

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