Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.1e-84 316.6 162 100.0
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 3.0e-82 308.5 162 95.7
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 4.0e-79 298.1 162 92.0
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 4.0e-79 298.1 162 92.6
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 6.9e-79 297.4 159 93.1
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.6e-78 295.4 162 91.4
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 9.9e-78 293.5 159 92.5
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 9.9e-78 293.5 159 92.5
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 9.9e-78 293.5 161 89.4
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 6.4e-77 290.8 161 89.4
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.4e-76 288.9 161 87.6
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.6e-75 286.2 161 88.8
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.6e-75 286.2 161 87.6
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.7e-75 285.4 161 88.8
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.7e-75 285.4 161 88.8
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.5e-75 285.0 161 88.2
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 4.6e-75 284.6 161 87.0
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 1.0e-74 283.5 161 85.1
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.0e-74 282.0 161 85.7
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 3.0e-74 282.0 161 87.6
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 3.9e-74 281.6 161 85.7
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 1.9e-73 279.3 161 84.5
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 1.9e-73 279.3 161 84.5
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.5e-73 278.9 159 86.2
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 3.3e-73 278.5 161 84.5
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.3e-73 278.5 161 85.1
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 3.3e-73 278.5 161 85.1
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 3.3e-73 278.5 161 85.1
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 3.3e-73 278.5 161 85.1
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 3.3e-73 278.5 161 85.7
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 3.3e-73 278.5 161 85.1
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 4.3e-73 278.1 161 85.1
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 4.3e-73 278.1 161 85.7
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.4e-73 277.3 161 84.5
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 9.6e-73 276.9 161 82.0
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 9.6e-73 276.9 158 85.4
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.3e-72 276.6 160 84.4
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.3e-72 276.6 161 83.9
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.6e-72 276.2 154 87.0
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.1e-72 275.8 161 82.0
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 3.6e-72 275.0 158 83.5
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 6.2e-72 274.2 161 82.6
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 8.1e-72 273.9 161 82.0
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 8.1e-72 273.9 161 82.0
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.4e-71 273.1 160 83.1
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.4e-71 273.1 159 82.4
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.8e-71 272.7 161 81.4
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.8e-71 272.7 159 83.0
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.8e-71 272.7 159 84.3
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 1.8e-71 272.7 153 86.9
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 2.4e-71 272.3 159 83.0
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 2.4e-71 272.3 161 81.4
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 3.1e-71 271.9 161 84.5
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 3.1e-71 271.9 161 82.0
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 4.0e-71 271.6 161 82.0
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 4.0e-71 271.6 184 75.5
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.0e-71 271.6 159 83.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 5.3e-71 271.2 161 83.9
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 6.9e-71 270.8 160 82.5
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.2e-70 270.0 160 84.4
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.2e-70 270.0 159 81.8
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 2.0e-70 269.2 160 81.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 2.6e-70 268.9 160 81.9
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.6e-70 268.9 160 81.9
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 3.4e-70 268.5 161 83.2
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 3.4e-70 268.5 153 85.6
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 5.8e-70 267.7 161 83.2
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 5.8e-70 267.7 161 83.2
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 5.8e-70 267.7 158 81.0
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 5.8e-70 267.7 160 81.9
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 9.9e-70 266.9 161 82.6
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.3e-69 266.5 153 83.7
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.3e-69 266.5 161 82.6
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.3e-69 266.5 153 85.0
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.2e-69 265.8 159 80.5
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.2e-69 265.8 161 82.0
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 2.2e-69 265.8 159 81.1
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 2.9e-69 265.4 161 79.5
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.9e-69 265.4 159 81.8
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 3.8e-69 265.0 171 78.9
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 3.8e-69 265.0 153 84.3
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 3.8e-69 265.0 153 84.3
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.1e-68 263.5 159 79.9
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.4e-68 263.1 159 82.4
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.4e-68 263.1 145 87.6
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 3.2e-68 261.9 159 80.5
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 4.2e-68 261.5 145 88.3
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 5.5e-68 261.2 159 81.8
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 7.1e-68 260.8 159 81.8
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 9.3e-68 260.4 161 79.5
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 9.3e-68 260.4 153 81.0
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.2e-67 260.0 145 86.9
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-67 260.0 159 79.9
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.0e-66 256.9 161 77.0
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.3e-66 256.5 153 83.0
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.3e-66 256.5 161 77.0
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.8e-66 256.1 159 78.0
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.8e-66 256.1 144 86.8
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 3.0e-66 255.4 159 78.0
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.1e-66 254.6 142 87.3
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 6.7e-66 254.2 153 82.4
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 3.3e-65 251.9 153 81.7
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 3.3e-65 251.9 146 84.2
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.3e-65 251.5 158 77.8
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.6e-64 249.6 140 85.7
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-64 249.6 158 77.2
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.1e-64 249.2 153 77.8
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 2.8e-64 248.8 137 89.8
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.1e-63 245.4 148 81.1
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-62 243.4 159 75.5
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 8.4e-61 237.3 159 76.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 8.4e-61 237.3 157 70.7
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 9.3e-60 233.8 154 74.0
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.7e-59 232.3 137 82.5
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.5e-57 226.5 158 73.4
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.7e-56 221.9 161 73.3
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 5.9e-54 214.5 144 80.6
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.7e-53 213.0 135 79.3
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 2.1e-51 206.1 151 61.6
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 4.6e-51 204.9 176 63.6
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 4.8e-48 194.9 117 84.6
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 6.3e-48 194.5 110 84.5
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 8.2e-48 194.1 146 66.4
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.4e-47 193.4 109 86.2
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 3.1e-47 192.2 117 78.6
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 6.9e-47 191.0 161 54.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 3.0e-42 175.6 113 77.9
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.8e-40 169.1 150 55.3
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.8e-40 169.1 110 76.4
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.3e-37 160.2 111 72.1
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 4.2e-36 155.2 100 75.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.8e-34 149.8 81 88.9
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-32 143.3 119 63.9
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.8e-32 142.5 119 62.2
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.1e-31 140.6 111 64.9
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 4.5e-30 135.2 93 73.1
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.7e-30 134.4 81 79.0
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.9e-29 132.5 81 81.5
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.5e-28 130.2 68 88.2
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 7.2e-28 127.9 120 65.0
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.3e-26 122.9 153 47.7
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 4.4e-25 118.6 170 45.9
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 2.0e-22 109.8 64 84.4
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.7e-21 106.7 66 78.8
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.2e-20 101.3 81 66.7
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 2.1e-19 99.8 52 88.5
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 4.8e-16 88.6 66 63.6
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 7.7e-14 81.3 58 63.8
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 2.9e-13 79.3 58 65.5
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.1e-07 59.3 33 81.8


User provided reference genes

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