Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 0.0e+00 1625.5 868 100.0
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 0.0e+00 1343.2 879 82.8
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 0.0e+00 1325.8 868 81.0
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 0.0e+00 1303.9 871 77.0
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 0.0e+00 1297.0 864 77.1
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 0.0e+00 1294.6 818 80.9
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 0.0e+00 1271.1 888 75.9
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 0.0e+00 1216.1 817 75.8
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 0.0e+00 1151.7 952 68.0
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 0.0e+00 1129.8 808 70.9
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 0.0e+00 1129.8 816 68.5
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 0.0e+00 1121.7 810 70.9
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 0.0e+00 1119.8 809 67.9
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 0.0e+00 1097.4 813 70.7
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 0.0e+00 1087.4 797 67.8
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 0.0e+00 1085.5 803 71.1
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 0.0e+00 1077.8 772 71.5
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 0.0e+00 1076.2 783 68.5
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 0.0e+00 1075.1 808 69.6
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 0.0e+00 1075.1 805 68.3
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 5.9e-312 1073.5 816 69.2
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 3.4e-310 1068.1 792 70.6
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 8.5e-309 1063.5 812 68.6
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 4.6e-307 1057.7 809 68.4
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 7.9e-307 1057.0 812 65.3
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 7.9e-307 1057.0 824 65.9
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 7.4e-305 1050.4 810 68.1
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 1.3e-301 1039.6 783 68.5
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 1.1e-297 1026.5 792 67.0
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 2.4e-295 1018.8 814 65.8
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 3.8e-293 1011.5 807 66.8
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 3.0e-290 1001.9 591 81.0
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 1.2e-289 1000.0 803 65.4
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 1.4e-287 993.0 802 62.6
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 2.2e-285 985.7 810 62.7
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 2.2e-285 985.7 800 63.8
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 5.5e-284 981.1 783 65.0
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 7.2e-284 980.7 782 64.7
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 3.6e-283 978.4 788 64.1
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 3.0e-282 975.3 668 71.6
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 7.5e-281 970.7 811 64.1
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 2.2e-280 969.1 821 63.3
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 2.2e-280 969.1 809 64.9
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 2.4e-279 965.7 793 64.2
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 1.6e-278 963.0 745 66.7
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 2.0e-278 962.6 816 63.4
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 2.0e-278 962.6 815 63.3
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 1.3e-277 959.9 807 61.2
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 1.7e-277 959.5 814 63.0
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 4.2e-276 954.9 799 63.2
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 9.5e-276 953.7 750 64.4
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 9.5e-276 953.7 683 71.0
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 8.0e-275 950.7 785 62.3
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 1.8e-274 949.5 807 63.6
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 5.2e-274 948.0 709 67.8
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 3.4e-273 945.3 785 63.2
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 3.4e-273 945.3 840 61.1
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 4.4e-273 944.9 735 66.0
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 9.8e-273 943.7 802 62.2
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 1.7e-272 943.0 813 62.5
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 6.3e-272 941.0 786 60.6
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 1.8e-271 939.5 802 62.7
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 4.5e-270 934.9 821 60.9
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 4.3e-268 928.3 794 64.1
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 1.8e-263 912.9 788 62.9
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 2.0e-262 909.4 732 65.3
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 1.9e-260 902.9 591 72.1
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 7.3e-260 901.0 811 60.7
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 8.0e-259 897.5 822 59.6
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 2.9e-256 889.0 789 61.5
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 8.3e-256 887.5 736 62.0
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 5.0e-253 878.2 794 57.8
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 4.7e-251 871.7 796 59.7
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 5.8e-249 864.8 757 58.0
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 6.4e-248 861.3 723 60.9
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 6.4e-248 861.3 889 54.7
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 7.1e-247 857.8 892 54.6
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 6.0e-246 854.7 788 58.9
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 6.2e-243 844.7 784 58.5
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 8.1e-243 844.3 781 58.3
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 1.8e-242 843.2 733 61.1
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 1.5e-241 840.1 686 65.5
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 7.6e-241 837.8 821 56.0
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 1.3e-240 837.0 807 56.3
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 4.9e-240 835.1 611 71.7
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 1.5e-233 813.5 794 57.1
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 4.6e-230 802.0 698 60.3
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 2.6e-185 653.3 510 65.1
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.6e-177 627.5 593 61.4
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 9.7e-172 608.2 813 45.4
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 3.0e-165 586.6 394 69.0
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 1.7e-160 570.9 493 62.1
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.3e-160 570.5 343 74.6
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 3.6e-158 563.1 529 64.5
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 8.0e-150 535.4 583 48.4
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 3.0e-149 533.5 701 48.1
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 9.2e-146 521.9 400 68.5
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 1.2e-140 505.0 647 44.7
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 8.3e-131 472.2 264 79.2
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 1.8e-109 401.4 346 55.8
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 4.0e-109 400.2 405 51.4
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 1.9e-103 381.3 343 55.4
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 1.5e-100 371.7 427 56.2
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 4.6e-97 360.1 188 84.0
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 8.4e-91 339.3 196 77.0
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 1.4e-80 305.4 322 64.0
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 2.5e-79 301.2 182 70.9
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-36 159.5 117 65.0
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 4.0e-32 144.4 83 74.7
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-30 136.7 350 30.6
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 5.4e-21 107.5 111 42.3
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 7.8e-20 103.6 288 35.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.9e-19 101.3 77 62.3
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 8.1e-17 93.6 152 51.3
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 1.1e-16 93.2 72 52.8
Oeu040143.1 Olea europaea HOM05D007000 ORTHO05D288686 4.9e-06 57.8 53 47.2


User provided reference genes

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