Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.3e-91 339.7 172 100.0
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 7.8e-73 277.3 159 87.4
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.5e-71 273.1 160 85.0
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.3e-63 245.4 160 75.0
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 9.6e-63 243.8 160 74.4
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 9.6e-63 243.8 160 74.4
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 3.6e-62 241.9 160 74.4
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 5.4e-58 228.0 167 70.1
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.2e-57 226.9 159 70.4
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.7e-57 225.7 159 71.7
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 1.3e-56 223.4 159 70.4
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 5.1e-56 221.5 159 68.6
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 6.6e-56 221.1 160 71.2
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 8.7e-56 220.7 160 71.2
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 8.7e-56 220.7 160 71.9
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 3.3e-55 218.8 160 70.0
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 4.3e-55 218.4 159 70.4
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 7.3e-55 217.6 160 69.4
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.3e-54 216.9 160 70.6
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.6e-54 216.5 160 71.9
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 6.2e-54 214.5 160 68.8
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 8.1e-54 214.2 160 71.2
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 8.1e-54 214.2 160 68.1
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 8.1e-54 214.2 160 67.5
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.4e-53 213.4 160 66.9
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.8e-53 213.0 160 69.4
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.8e-53 213.0 160 70.0
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 2.4e-53 212.6 159 67.9
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 2.4e-53 212.6 160 69.4
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 2.4e-53 212.6 161 68.3
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 4.0e-53 211.8 160 65.0
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 4.0e-53 211.8 161 67.1
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 5.3e-53 211.5 158 68.4
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 6.9e-53 211.1 160 69.4
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 9.0e-53 210.7 160 69.4
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 1.2e-52 210.3 160 69.4
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.5e-52 209.9 160 66.2
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.4e-52 208.8 161 65.8
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 3.4e-52 208.8 179 64.2
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 5.8e-52 208.0 160 65.0
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 5.8e-52 208.0 160 64.4
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 9.9e-52 207.2 160 63.8
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.3e-51 206.8 161 65.8
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 2.2e-51 206.1 159 62.9
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 2.2e-51 206.1 160 64.4
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 2.9e-51 205.7 160 67.5
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 3.8e-51 205.3 159 66.0
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 3.8e-51 205.3 159 66.0
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 4.9e-51 204.9 161 64.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 4.9e-51 204.9 160 66.2
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-50 203.8 159 65.4
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 1.9e-50 203.0 159 65.4
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 3.2e-50 202.2 160 64.4
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-50 202.2 159 65.4
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 3.2e-50 202.2 160 64.4
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 5.4e-50 201.4 160 66.2
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 5.4e-50 201.4 160 63.8
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 5.4e-50 201.4 160 64.4
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 5.4e-50 201.4 160 61.2
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.2e-49 200.3 160 66.2
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.6e-49 199.9 159 62.9
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.9e-49 197.6 159 61.0
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.8e-48 196.4 160 61.9
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.0e-48 195.7 159 62.9
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 3.0e-48 195.7 160 61.9
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.9e-48 195.3 149 69.8
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 3.9e-48 195.3 150 66.7
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.9e-48 195.3 147 68.0
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 5.1e-48 194.9 160 64.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 5.1e-48 194.9 160 63.1
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.3e-47 191.8 160 66.2
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 7.4e-47 191.0 159 59.1
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 7.4e-47 191.0 160 61.2
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.4e-47 191.0 159 59.7
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 9.6e-47 190.7 159 58.5
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.6e-47 190.7 159 62.3
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 9.6e-47 190.7 161 60.9
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.3e-46 190.3 159 62.3
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.3e-46 190.3 159 62.3
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 2.8e-46 189.1 160 57.5
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 3.7e-46 188.7 159 58.5
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.1e-45 187.2 159 58.5
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.4e-45 186.8 159 57.2
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.8e-45 186.4 159 57.9
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 9.0e-45 184.1 159 59.1
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 9.0e-45 184.1 161 58.4
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 9.0e-45 184.1 159 56.6
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.5e-44 183.3 161 57.1
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 2.6e-44 182.6 159 57.2
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 5.8e-44 181.4 159 57.2
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.3e-43 180.3 160 56.9
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 4.9e-43 178.3 160 59.4
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 8.4e-43 177.6 161 57.8
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.4e-42 176.8 160 58.8
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.7e-41 172.6 187 52.9
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.0e-40 170.6 175 53.7
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 3.0e-40 169.1 172 51.7
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.7e-40 167.9 176 55.7
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 9.0e-37 157.5 159 50.9
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.2e-36 157.1 157 52.9
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.0e-35 154.1 181 48.6
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-35 153.7 158 55.1
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.2e-34 148.7 150 52.7
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.6e-30 136.7 126 57.9
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.7e-30 135.6 115 60.0
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 2.2e-27 126.3 103 61.2
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 6.5e-27 124.8 86 75.6
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 7.2e-26 121.3 84 73.8
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-23 113.2 100 60.0
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.3e-21 105.1 70 71.4
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-19 99.8 164 40.9
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-19 99.4 124 50.0
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-18 97.4 95 55.8
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.4e-18 97.1 75 65.3
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 9.4e-18 94.4 157 35.0
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.1e-17 93.2 81 53.1
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.6e-17 92.4 74 63.5
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-16 90.1 110 50.0
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-15 86.7 80 57.5
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 4.4e-15 85.5 75 54.7
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 7.4e-15 84.7 95 45.3
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.3e-14 81.6 90 51.1
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.3e-14 81.6 88 53.4
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.1e-13 79.3 76 57.9
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.7e-11 73.6 58 56.9
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 8.0e-09 64.7 86 44.2
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.3e-08 63.2 40 77.5
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.3e-06 57.4 45 51.1
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 1.7e-06 57.0 47 51.1
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 1.7e-06 57.0 47 51.1
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.2e-06 56.6 38 71.1
ECA240G4443 Erigeron canadensis HOM05D000331 ORTHO05D006501 6.3e-06 55.1 55 52.7


User provided reference genes

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